CB304730

Overview
NameCB304730
Unique NameCB304730
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: TRXH_RICCO (Thioredoxin H-type OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.403e-42
Identity = 79/110 (71.82%), Postives = 93/110 (84.55%), Query Frame = -2
Query:  210 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELPKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 539
            AEEGQVI CHTVE+WNEQLQKG   K LIVVDFTASWC PC+ ++P L+EL KKLP V FLKVDVDELK+VA EWAVE+MPTF+  KEGK+++++VGAKKDELQ  + KH
Sbjct:    3 AEEGQVIGCHTVEAWNEQLQKGNDTKGLIVVDFTASWCGPCRFIAPFLAELAKKLPNVTFLKVDVDELKTVAHEWAVESMPTFMFLKEGKIMDKVVGAKKDELQQTIAKH 112          
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: TRXH2_TOBAC (Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 6.358e-41
Identity = 78/111 (70.27%), Postives = 92/111 (82.88%), Query Frame = -2
Query:  210 MAEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELPKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 542
            MAEEGQVI  HTV++WNE LQKGI  KKLIVVDFTASWC PCK ++   +EL KK+P V FLKVDVDELKSVA +WAVEAMPTF+  KEGK+++++VGAKKDELQ  + KH
Sbjct:    1 MAEEGQVIGVHTVDAWNEHLQKGIDDKKLIVVDFTASWCGPCKFIASFYAELAKKMPTVTFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKDELQQTIAKH 111          
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: TRXH1_ARATH (Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.416e-40
Identity = 73/110 (66.36%), Postives = 93/110 (84.55%), Query Frame = -2
Query:  210 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELPKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 539
            +EEGQVI+CHTVE+WNEQLQK   +K L+VVDFTASWC PC+ ++P  ++L KKLP V+FLKVD DELKSVA +WA++AMPTF+  KEGK+L+++VGAKKDELQ  + KH
Sbjct:    3 SEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKH 112          
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: TRXH1_TOBAC (Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.489e-39
Identity = 71/110 (64.55%), Postives = 91/110 (82.73%), Query Frame = -2
Query:  210 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELPKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 539
            +EEGQV  CH VE WNE  +KG+  KKL+VVDFTASWC PC+ ++PIL+++ KK+P VIFLKVDVDELK+V+ EW+VEAMPTFV  K+GK ++R+VGAKK+ELQ  + KH
Sbjct:    9 SEEGQVFGCHKVEEWNEYFKKGVETKKLVVVDFTASWCGPCRFIAPILADIAKKMPHVIFLKVDVDELKTVSAEWSVEAMPTFVFIKDGKEVDRVVGAKKEELQQTIVKH 118          
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: TRXH_FAGES (Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.792e-35
Identity = 70/111 (63.06%), Postives = 88/111 (79.28%), Query Frame = -2
Query:  210 MAEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELPKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 542
            MAEE QVI+CHTV+ WNE+ QK   + KLIV+DFTASWC PC++++P +SEL KK P V F KVDVD+LK VAEE+ VEAMP+FV+ KEG+ +ERIVGA+KDEL   +  H
Sbjct:    1 MAEEAQVIACHTVQEWNEKFQKAKDSGKLIVIDFTASWCGPCRVITPYVSELAKKFPHVAFFKVDVDDLKDVAEEYKVEAMPSFVILKEGQEVERIVGARKDELLHKIAVH 111          
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: TRXH5_ARATH (Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TRX5 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.892e-35
Identity = 63/111 (56.76%), Postives = 89/111 (80.18%), Query Frame = -2
Query:  210 MAEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELPKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 542
            MA EG+VI+CHT+E WNE+++    +KKLIV+DFTASWCPPC+ ++P+ +E+ KK   V+F K+DVDEL++VA+E+ VEAMPTFV  KEG +++R+VGA KDE+   + KH
Sbjct:    1 MAGEGEVIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVVFFKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMKH 111          
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: TRXH3_ARATH (Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TRX3 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.190e-33
Identity = 63/111 (56.76%), Postives = 87/111 (78.38%), Query Frame = -2
Query:  210 MAEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELPKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 542
            MA EG+VI+CHTVE W E+L+    +KKLIV+DFTA+WCPPC+ ++P+ ++L KK   V+F KVDVDEL +VAEE+ V+AMPTF+  KEG++ E +VGA K+E+   +EKH
Sbjct:    1 MAAEGEVIACHTVEDWTEKLKAANESKKLIVIDFTATWCPPCRFIAPVFADLAKKHLDVVFFKVDVDELNTVAEEFKVQAMPTFIFMKEGEIKETVVGAAKEEIIANLEKH 111          
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: TRXH4_ARATH (Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TRX4 PE=2 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 8.323e-33
Identity = 65/111 (58.56%), Postives = 87/111 (78.38%), Query Frame = -2
Query:  210 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELPKK-LPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 539
            AEEGQVI CHT + W  QL K   + KLIV+DFTASWCPPC++++PI ++L KK + + IF KVDVDEL+SVA+E+ VEAMPTFV  K G+V++++VGA K++LQ  + KH
Sbjct:    3 AEEGQVIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAIFFKVDVDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKEDLQAKIVKH 113          
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: TRXH_WHEAT (Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 139.813 bits (351), Expect = 1.087e-32
Identity = 63/107 (58.88%), Postives = 85/107 (79.44%), Query Frame = -2
Query:  210 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELPKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 530
            G+VIS H++E W  Q+++  AAKKL+V+DFTASWC PC++M+PI ++L KK PA +FLKVDVDELK +AE+++VEAMPTF+  KEG V +R+VGA K+EL   V  H
Sbjct:   18 GEVISVHSLEQWTMQIEEANAAKKLVVIDFTASWCGPCRIMAPIFADLAKKFPAAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTTKVGLH 124          
BLAST of CB304730 vs. ExPASy Swiss-Prot
Match: TRXH_PICMA (Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.854e-32
Identity = 58/105 (55.24%), Postives = 80/105 (76.19%), Query Frame = -2
Query:  219 EGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELPKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAV 533
            EG V +CH+ E W  +LQ+ I  K+L+ VDFTA+WC PC+++ P+  EL KK P + FLKVDVDEL+ VA+EW VEAMPTF+  K+GK ++++VGAKKD+L+  V
Sbjct:    3 EGNVFACHSTEGWRSKLQEAIDTKRLVAVDFTATWCGPCRVIGPVFVELSKKFPEIFFLKVDVDELRDVAQEWDVEAMPTFIFIKDGKAVDKVVGAKKDDLERKV 107          
The following BLAST results are available for this feature:
BLAST of CB304730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
TRXH_RICCO4.403e-4271.82Thioredoxin H-type OS=Ricinus communis PE=3 SV=1[more]
TRXH2_TOBAC6.358e-4170.27Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=... [more]
TRXH1_ARATH1.416e-4066.36Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TR... [more]
TRXH1_TOBAC3.489e-3964.55Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=... [more]
TRXH_FAGES1.792e-3563.06Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV... [more]
TRXH5_ARATH8.892e-3556.76Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TR... [more]
TRXH3_ARATH2.190e-3356.76Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TR... [more]
TRXH4_ARATH8.323e-3358.56Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_WHEAT1.087e-3258.88Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3[more]
TRXH_PICMA1.854e-3255.24Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_A09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_A09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304730 ID=CB304730; Name=CB304730; organism=Citrus sinensis; type=EST; length=630bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGACGCCAAAGACGGTGTGCT
AGAAGATTGTCATTTATTCGTATATACAGGCCTGTTAAACATGGTACCAT
ATTCTTACATTAAGCAACCACAAACACACACCTTACAATAAAAGACCAAT
GAGATTCATGTACGCATCAATCAAGCATTAGCAGTAGTTGCATTCTCAAC
AGTTGTTGCGTGCTTTTCGACAGCCAGCTGCAGCTCATCTTTCTTCGCTC
CCACAATCCTCTCCAGGACTTTGCCTTCTTTCGTCAGTACAAAGGTCGGC
ATGGCTTCCACAGCCCATTCCTCAGCGACGGACTTCAATTCATCAACATC
CACCTTCAAGAATATGACAGCGGGCAGCTTCTTCGGCAATTCACTCAAAA
TTGGAGACATCAACTTGCATGGCGGGCACCATGAAGCCGTAAAATCCACC
ACTATCAGTTTCTTTGCCGCAATGCCCTTTTGGAGCTGCTCGTTCCAGGA
TTCAACAGTGTGGCAGCTGATCACTTGTCCCTCCTCGGCCATCTTAATTA
TGATCACAAGTTAAATTACTTCTCTGTTCTGATTTCTTTATATTTGTTTC
TGTGTTTGGTGACGGAACTCTTGCAATCTT
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