CB304754

Overview
NameCB304754
Unique NameCB304754
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11611 contig Csv1_Contig11611:422..998. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_ARATH (Argininosuccinate synthase, chloroplastic OS=Arabidopsis thaliana GN=At4g24830 PE=2 SV=3)

HSP 1 Score: 357.066 bits (915), Expect = 3.633e-98
Identity = 171/182 (93.96%), Postives = 178/182 (97.80%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            LDTSVIVPWL+ENYGCEVVCFTADVGQGIKEL+GLE+KAKASGA QLVVKDL EEFVKD+IFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVA EVGADAVAHGCTGKGNDQVRFELTFF+LNPEL VVAPWREW+IQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGD+LEDP
Sbjct:  107 LDTSVIVPWLKENYGCEVVCFTADVGQGIKELEGLEQKAKASGASQLVVKDLTEEFVKDFIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAAEVGADAVAHGCTGKGNDQVRFELTFFSLNPELKVVAPWREWEIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDLLEDP 288          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_CARHZ (Argininosuccinate synthase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=argG PE=3 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 2.219e-71
Identity = 124/182 (68.13%), Postives = 154/182 (84.62%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            LDTS+I+PWL+ENYG EV+   ADVGQG +EL+ L EKA  SGA ++ ++D+KEEFV+D++FP L+AGA+YE KYLLGTS+ARP+IAK +V++A + GA AVAHG TGKGNDQVRFELT  ALNP+L ++APWREW+I+ REDAI+YA+K  +PVPVTKK  YS DRNLWHLSHEG ILEDP
Sbjct:   13 LDTSIIIPWLKENYGYEVIAMVADVGQG-EELEPLREKAIKSGAAKIYIEDVKEEFVRDFVFPMLKAGAVYENKYLLGTSVARPLIAKKLVEIAEKEGAVAVAHGATGKGNDQVRFELTVKALNPDLKIIAPWREWEIKSREDAIDYAEKRGIPVPVTKKQPYSMDRNLWHLSHEGGILEDP 193          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_ROSS1 (Argininosuccinate synthase OS=Roseiflexus sp. (strain RS-1) GN=argG PE=3 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 1.590e-69
Identity = 121/183 (66.12%), Postives = 154/183 (84.15%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGC-EVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            LDTS+IVPWL++NYG  EV+C+ A++GQ   EL GLEEKA A+GA +  V+DL+EEFV+D++FP L++GA+YER YLLGTS+ARP+IA+   ++A + GADA+AHGCTGKGNDQVRFELT+ A  P L V+APWREW+I+ REDA++YA +HNVPV  T KSIYSRDRN+WH+SHEG ILEDP
Sbjct:   16 LDTSIIVPWLKQNYGNPEVICYCANIGQD-DELSGLEEKAIATGASKCYVEDLREEFVRDFLFPLLQSGAVYERTYLLGTSVARPLIARRQAEIALQEGADALAHGCTGKGNDQVRFELTYMAFAPHLKVIAPWREWNIRSREDALDYAAEHNVPVTATLKSIYSRDRNIWHMSHEGGILEDP 197          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_IDILO (Argininosuccinate synthase OS=Idiomarina loihiensis GN=argG PE=3 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 2.713e-69
Identity = 120/182 (65.93%), Postives = 146/182 (80.22%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            LDTS IVPWL+ENYGCEVV F ADVGQG +EL+G+EEKAKASGA +  V DLK+EFVK+Y++P L+ GAIYE  YLLGT+MARP+IAKA V+VAR+VGADA++HGCTGKGNDQVRFE  + AL P+L V+APWREW++  RE  + Y  + N+P   +   IYSRD N WH+SHEG  LEDP
Sbjct:   15 LDTSAIVPWLKENYGCEVVAFVADVGQGAEELEGVEEKAKASGASECHVVDLKDEFVKNYVYPTLKTGAIYEGTYLLGTAMARPIIAKAQVEVARKVGADALSHGCTGKGNDQVRFESCYAALAPDLQVIAPWREWELSSRESLLGYLAERNIPCSASATKIYSRDANAWHISHEGGELEDP 196          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_VIBHB (Argininosuccinate synthase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=argG PE=3 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 7.893e-69
Identity = 120/181 (66.30%), Postives = 144/181 (79.56%), Query Frame = -1
Query:   35 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILED 577
            LDTSVI+PWL+ENY CEVV F ADVGQG +EL+G+E KAKASGA +  + DLKEE V DYIFP L+ GA YE KYLLGTSMARP+IAKA V+VAR+VGADA+ HGCTGKGNDQVRFE  F AL P+L+V+APWREWD+  RE+ ++Y  + N+P   +   IYSRD N WH+S EG +LED
Sbjct:   17 LDTSVIIPWLKENYDCEVVAFVADVGQGAEELEGIEAKAKASGASECYIADLKEEMVADYIFPTLKTGAYYEGKYLLGTSMARPIIAKAQVEVARKVGADALCHGCTGKGNDQVRFEGAFAALAPDLHVIAPWREWDLVSREECLDYLAERNIPCSASLTKIYSRDANAWHISTEGGVLED 197          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_ROSCS (Argininosuccinate synthase OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=argG PE=3 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 7.893e-69
Identity = 120/183 (65.57%), Postives = 153/183 (83.61%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGC-EVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            LDTS+IVPWL++NYG  EV+C+ A++GQ   EL GLE KA A+GA +  V+DL+EEFV+D++FP L++GA+YER YLLGTS+ARP+IA+   ++A + GADA+AHGCTGKGNDQVRFELT+ A  P L V+APWREW+I+ REDA++YA +HNVPV  T KSIYSRDRN+WH+SHEG ILEDP
Sbjct:   16 LDTSIIVPWLKQNYGNPEVICYCANIGQD-DELSGLEAKAIATGASKCYVEDLREEFVRDFLFPLLQSGAVYERTYLLGTSVARPLIARRQAEIALQEGADALAHGCTGKGNDQVRFELTYMAFAPHLKVIAPWREWNIRSREDALDYAAEHNVPVTATLKSIYSRDRNIWHMSHEGGILEDP 197          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_DESRM (Argininosuccinate synthase OS=Desulfotomaculum reducens (strain MI-1) GN=argG PE=3 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 6.682e-68
Identity = 124/182 (68.13%), Postives = 150/182 (82.42%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            LDTSVI+ WL+ENYG EV+  TAD+GQG +EL  LEEKA  SGA ++ ++DL++EFV+DYI+P L+AGAIYE KYLLGTS ARP+IAK +V++A + GA AVAHG TGKGNDQVRFEL   AL P L V+APWREWDI+ REDAI+YA+   +PVPVTKKSIYSRDRN+WH+SHEG  LE P
Sbjct:   12 LDTSVIIAWLKENYGYEVIAVTADLGQG-EELAPLEEKALQSGASKIYIEDLRKEFVEDYIWPTLKAGAIYEGKYLLGTSFARPLIAKKLVEIAEKEGAVAVAHGATGKGNDQVRFELGVKALAPHLKVIAPWREWDIRSREDAIDYAEARGIPVPVTKKSIYSRDRNIWHISHEGGELESP 192          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_PSEHT (Argininosuccinate synthase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=argG PE=3 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 8.727e-68
Identity = 117/182 (64.29%), Postives = 143/182 (78.57%), Query Frame = -1
Query:   32 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDP 577
            LDTS IVPWL+ENYGCEV+ F ADVGQG +EL+G+E KA ASGA +  V DLK+E V DYI+P L+ G+IYE  YLLGTSMARP+IAKA V++AR+VGADA++HGCTGKGNDQVRFE  F AL P+L V+APWREWD+  RE  ++Y  + ++P   +   IYSRD N WH+SHEG  LEDP
Sbjct:   15 LDTSAIVPWLKENYGCEVIAFVADVGQGAEELEGVEAKAIASGASECYVVDLKDEMVSDYIYPTLKTGSIYEGTYLLGTSMARPIIAKAQVEIARKVGADALSHGCTGKGNDQVRFESCFAALAPDLQVIAPWREWDLSSRESLLDYLAERDIPCSASATKIYSRDANAWHISHEGGELEDP 196          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_VIBPA (Argininosuccinate synthase OS=Vibrio parahaemolyticus GN=argG PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.140e-67
Identity = 118/181 (65.19%), Postives = 143/181 (79.01%), Query Frame = -1
Query:   35 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILED 577
            LDTSVI+PWL+ENY CEVV F ADVGQG +EL+G+E KAKASGA +  + DLKEE V DYI+P L+ GA YE KYLLGTSMARP+IAKA V+VAR+VGADA+ HGCTGKGNDQVRFE  F AL P+L+V+APWREWD+  RE  ++Y  + N+P   +   IYSRD N WH+S EG +LE+
Sbjct:   17 LDTSVIIPWLKENYDCEVVAFVADVGQGAEELEGIEAKAKASGASECYIADLKEEMVADYIYPTLKTGAYYEGKYLLGTSMARPIIAKAQVEVARKVGADALCHGCTGKGNDQVRFEGAFAALAPDLHVIAPWREWDLVSREQCLDYLAERNIPCSASLTKIYSRDANAWHISTEGGVLEN 197          
BLAST of CB304754 vs. ExPASy Swiss-Prot
Match: ASSY_ALISL (Argininosuccinate synthase OS=Aliivibrio salmonicida (strain LFI1238) GN=argG PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.140e-67
Identity = 117/181 (64.64%), Postives = 143/181 (79.01%), Query Frame = -1
Query:   35 LDTSVIVPWLRENYGCEVVCFTADVGQGIKELDGLEEKAKASGACQLVVKDLKEEFVKDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPELNVVAPWREWDIQGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILED 577
            LDTSVI+PWL+ENY CEV+ F ADVGQG +EL+G+E KA ASGA +  V DLKEE V +YIFP L+ GA+YE KYLLGTSMARP+IAKA V+VAR VGADA+ HGCTGKGNDQ+RFE  F AL P+L+V+APWREWD+  RE+ ++Y  + N+P   +   IYSRD N WH+S EG +LED
Sbjct:   18 LDTSVIIPWLKENYDCEVIAFVADVGQGAEELEGIEAKAIASGASECYVADLKEEMVSEYIFPTLKTGALYEGKYLLGTSMARPIIAKAQVEVARNVGADALCHGCTGKGNDQIRFEGAFAALAPDLHVIAPWREWDLVSREECLDYLAERNIPCTASLTKIYSRDANAWHISTEGGVLED 198          
The following BLAST results are available for this feature:
BLAST of CB304754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ASSY_ARATH3.633e-9893.96Argininosuccinate synthase, chloroplastic OS=Arabi... [more]
ASSY_CARHZ2.219e-7168.13Argininosuccinate synthase OS=Carboxydothermus hyd... [more]
ASSY_ROSS11.590e-6966.12Argininosuccinate synthase OS=Roseiflexus sp. (str... [more]
ASSY_IDILO2.713e-6965.93Argininosuccinate synthase OS=Idiomarina loihiensi... [more]
ASSY_VIBHB7.893e-6966.30Argininosuccinate synthase OS=Vibrio harveyi (stra... [more]
ASSY_ROSCS7.893e-6965.57Argininosuccinate synthase OS=Roseiflexus castenho... [more]
ASSY_DESRM6.682e-6868.13Argininosuccinate synthase OS=Desulfotomaculum red... [more]
ASSY_PSEHT8.727e-6864.29Argininosuccinate synthase OS=Pseudoalteromonas ha... [more]
ASSY_VIBPA1.140e-6765.19Argininosuccinate synthase OS=Vibrio parahaemolyti... [more]
ASSY_ALISL1.140e-6764.64Argininosuccinate synthase OS=Aliivibrio salmonici... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_D09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_D09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304754 ID=CB304754; Name=CB304754; organism=Citrus sinensis; type=EST; length=577bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGATCTTCCAAGATGTCC
CCCTCATGGCTCAAGTGCCATAAATTCCGGTCTCTACTGTATATGGATTT
TTTTGTTACAGGAACAGGCACGTTGTGCTTCTTAGCATATTCAATAGCAT
CTTCTCTTCCCTGAATATCCCATTCCCTCCATGGAGCCACAACATTCAAC
TCAGGATTTAAAGCAAAGAATGTAAGCTCAAAGCGGACCTGGTCATTTCC
TTTTCCTGTGCACCCATGAGCGACAGCATCAGCTCCAACTTCTCTGGCAA
CATCCACCATGGCCTTGGCAATAACGGGGCGGGCCATTGATGTTCCCAGC
AGATACTTTCTCTCATAAATTGCACCAGCTCGCAAGCAAGGAAATATATA
GTCTTTAACAAATTCCTCCTTCAAATCCTTCACCACTAACTGACAAGCTC
CACTAGCCTTGGCCTTCTCTTCCAATCCATCCAATTCCTTGATTCCTTGA
CCAACATCAGCAGTGAAACAAACAACCTCACAACCATAATTCTCCCTTAG
CCATGGCACAATGACTGAAGTGTCTAA
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