CB304756

Overview
NameCB304756
Unique NameCB304756
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5695 contig Csv1_Contig5695:255..864. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304756 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 9.895e-36
Identity = 75/108 (69.44%), Postives = 86/108 (79.63%), Query Frame = -2
Query:  225 DVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTXXXXXXXXXVPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV 548
            D+ AFSGPAPERINGRLAMIGFVAA+ VE++KGQ +  QLS GGVAWFLGT         +P F+GVSVESKS   M+SDAE WNGR AM+GLVALA TEFVKG++LV
Sbjct:   89 DLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAFTEFVKGTSLV 196          
BLAST of CB304756 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.132e-31
Identity = 65/109 (59.63%), Postives = 86/109 (78.90%), Query Frame = -2
Query:  225 LDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTXXXXXXXXXVPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV 551
            +D+F+F G APERINGR AMIGFVAA+ VEL+ G+DVF+Q+ +GGV WFL T         +P+++G+S E+K++GF  SDAE+WNGRFAM+GLVALA TE+VKG  L+
Sbjct:   89 VDLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGGPLI 197          
BLAST of CB304756 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.361e-29
Identity = 66/112 (58.93%), Postives = 80/112 (71.43%), Query Frame = -2
Query:  225 VLDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLS--DGGVAWFLGTXXXXXXXXXVPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV 554
            V D  AFSGPAPERINGRLAM+GFVAAL+VE ++G  +  Q+     G+AWFL T         +PL +G SVESKS G  ++DAELWNGRFAM+GLVALA TEF+ G+  V
Sbjct:  118 VWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFITGAPFV 229          
BLAST of CB304756 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.167e-26
Identity = 60/111 (54.05%), Postives = 74/111 (66.67%), Query Frame = -2
Query:  225 VLDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDG-GVAWFLGTXXXXXXXXXVPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV 554
            + D  AFSGPAPERINGRLAM+GFV ALAVE  +G  + +QL  G G AWF  T         VPL +G S E ++   M ++AELWNGRFAM+GLVALA TE + G+  +
Sbjct:   55 IWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMIGLVALAATEIITGTPFI 165          
BLAST of CB304756 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.442e-26
Identity = 60/111 (54.05%), Postives = 74/111 (66.67%), Query Frame = -2
Query:  225 VLDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDG-GVAWFLGTXXXXXXXXXVPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV 554
            + D  AFSGPAPERINGRLAM+GFV ALAVE  +G  + +QL  G G AWF  T         VPL +G S E ++   M ++AELWNGRFAM+GLVALA TE + G+  +
Sbjct:   60 IWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLGLVALAATEIITGAPFI 170          
BLAST of CB304756 vs. ExPASy Swiss-Prot
Match: CBR_DUNBA (Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.284e-13
Identity = 52/111 (46.85%), Postives = 61/111 (54.95%), Query Frame = -2
Query:  228 VLDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTXXXXXXXXXVPLFKGVSVESKSD--GFMTSDAELWNGRFAMMGLVALAVTEFVKGSTL 554
            V +V  FSG APE INGRLAM+GFVAAL  ELS G+ V  QL D      L T         +P F       K D  G  T DAE+ NGRFAM+G  A+ V E ++G  L
Sbjct:   67 VTEVMGFSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTLIAL-TFVLFSAASLIPAF----ARRKGDAMGPFTPDAEMTNGRFAMIGFAAMLVYEGIQGIAL 171          
The following BLAST results are available for this feature:
BLAST of CB304756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ELI_PEA9.895e-3669.44Early light-induced protein, chloroplastic OS=Pisu... [more]
DS22_CRAPL1.132e-3159.63Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI5_HORVU2.361e-2958.93High molecular mass early light-inducible protein ... [more]
ELI6_HORVU4.167e-2654.05Low molecular mass early light-inducible protein H... [more]
ELI9_HORVU5.442e-2654.05Low molecular mass early light-inducible protein H... [more]
CBR_DUNBA5.284e-1346.85Carotene biosynthesis-related protein CBR, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_D11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_D11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304756 ID=CB304756; Name=CB304756; organism=Citrus sinensis; type=EST; length=609bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAAACGGAAAAGGGTGATT
TATTTAGAGAATTGGCATGGGAAAACAGAGATTTACATACAACACCACCA
TAATTCATACACAATAATTAGCCACGGAAGAAACATGACGTGCGCTTCAA
GTATTAAGAATAGGGTCTTGTTATCATTTCAAGACTCTGCAGTCCGCATA
TCACTGGAAAATTGGACTTAACTAAACAAGGGTACTGCCTTTAACAAACT
CAGTGACAGCCAAAGCAACAAGACCCATCATAGCGAACCTCCCATTCCAC
AACTCAGCATCCGAAGTCATGAACCCATCCGATTTAGACTCCACGCTGAC
ACCTTTAAACAAAGGAACCAGGGACGCAACCGAAAGCAGAACACTGGTCC
CCAAGAACCAGGCAACTCCACCGTCTGATAACTGGGCAAACACATCCTGA
CCCTTGGATAGCTCCACCGCCAATGCAGCCACGAACCCAATCATCGCAAG
CCTCCCGTTTATCCTCTCCGGTGCCGGCCCGCTGAACGCAAACACGTCGA
GAACTTCGTGCTTATACGCGGAGCTTTGGTGGCTGNNNNNNTTGATCCTT
CTGCTGCTC
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