CB304765

Overview
NameCB304765
Unique NameCB304765
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5695 contig Csv1_Contig5695:227..863. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304765 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 5.549e-40
Identity = 84/122 (68.85%), Postives = 97/122 (79.51%), Query Frame = -1
Query:  224 TQPPKLPRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTXXXXXXXXXVPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV 589
            T+PPK+   STKFSD+ AFSGPAPERINGRLAMIGFVAA+ VE++KGQ +  QLS GGVAWFLGT         +P F+GVSVESKS   M+SDAE WNGR AM+GLVALA TEFVKG++LV
Sbjct:   78 TRPPKM---STKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAFTEFVKGTSLV 196          
BLAST of CB304765 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.852e-33
Identity = 73/138 (52.90%), Postives = 98/138 (71.01%), Query Frame = -1
Query:  224 KNEQQKDQSTQP------PKLPRISTKFS-DVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTXXXXXXXXXVPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV 616
            + +QQK Q T        P    ++TK + D+F+F G APERINGR AMIGFVAA+ VEL+ G+DVF+Q+ +GGV WFL T         +P+++G+S E+K++GF  SDAE+WNGRFAM+GLVALA TE+VKG  L+
Sbjct:   60 EQQQQKQQQTHDGGPDLTPNRTEVTTKRTVDLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGGPLI 197          
BLAST of CB304765 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.986e-30
Identity = 69/139 (49.64%), Postives = 85/139 (61.15%), Query Frame = -1
Query:  224 LSVRCMAKNEQQKDQSTQPPKLPRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDG-GVAWFLGTXXXXXXXXXVPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV 637
            L  R +    Q +  S  PP  P+ ST   D  AFSGPAPERINGRLAM+GFV ALAVE  +G  + +QL  G G AWF  T         VPL +G S E ++   M ++AELWNGRFAM+GLVALA TE + G+  +
Sbjct:   32 LGRRALVVRAQTEGPSAPPPNKPKASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLGLVALAATEIITGAPFI 170          
BLAST of CB304765 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.879e-30
Identity = 68/139 (48.92%), Postives = 85/139 (61.15%), Query Frame = -1
Query:  224 LSVRCMAKNEQQKDQSTQPPKLPRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDG-GVAWFLGTXXXXXXXXXVPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV 637
            L  R +    Q +  +  PP  P+ ST   D  AFSGPAPERINGRLAM+GFV ALAVE  +G  + +QL  G G AWF  T         VPL +G S E ++   M ++AELWNGRFAM+GLVALA TE + G+  +
Sbjct:   27 LGRRTLVVRAQTEGPNAPPPNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMIGLVALAATEIITGTPFI 165          
BLAST of CB304765 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.583e-29
Identity = 70/129 (54.26%), Postives = 86/129 (66.67%), Query Frame = -1
Query:  224 TQPPKLPRISTKFS-----DVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLS--DGGVAWFLGTXXXXXXXXXVPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV 589
            T  P  P+  TK +     D  AFSGPAPERINGRLAM+GFVAAL+VE ++G  +  Q+     G+AWFL T         +PL +G SVESKS G  ++DAELWNGRFAM+GLVALA TEF+ G+  V
Sbjct:  101 TTIPAAPKPVTKKANPSVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFITGAPFV 229          
BLAST of CB304765 vs. ExPASy Swiss-Prot
Match: CBR_DUNBA (Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.165e-13
Identity = 55/121 (45.45%), Postives = 65/121 (53.72%), Query Frame = -1
Query:  227 PPKLPRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTXXXXXXXXXVPLFKGVSVESKSD--GFMTSDAELWNGRFAMMGLVALAVTEFVKGSTL 583
            PP  P   T  ++V  FSG APE INGRLAM+GFVAAL  ELS G+ V  QL D      L T         +P F       K D  G  T DAE+ NGRFAM+G  A+ V E ++G  L
Sbjct:   58 PPPTPAAPT-VTEVMGFSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTLIAL-TFVLFSAASLIPAF----ARRKGDAMGPFTPDAEMTNGRFAMIGFAAMLVYEGIQGIAL 171          
The following BLAST results are available for this feature:
BLAST of CB304765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ELI_PEA5.549e-4068.85Early light-induced protein, chloroplastic OS=Pisu... [more]
DS22_CRAPL3.852e-3352.90Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI9_HORVU3.986e-3049.64Low molecular mass early light-inducible protein H... [more]
ELI6_HORVU8.879e-3048.92Low molecular mass early light-inducible protein H... [more]
ELI5_HORVU2.583e-2954.26High molecular mass early light-inducible protein ... [more]
CBR_DUNBA1.165e-1345.45Carotene biosynthesis-related protein CBR, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_F03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_F03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304765 ID=CB304765; Name=CB304765; organism=Citrus sinensis; type=EST; length=637bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAAAACGGAAAAGGGTGATTT
ATTTAGAGAATTGGCATGGGAAAACAGAGATTTACATACAACACCACCAT
AATTCATACACAATAATTAGCCACGGAAGAAACATGACGTGCGCTTCGAG
TATTAAGGATAGGGTCTTGTTATCATTTCAAGACTCCGCAGTCCGCATAT
CACTGGAAAATTGGACTTAACTAAACAAGGGTACTGCCTTTAACAAACTC
AGTGACAGCCAAAGCAACAAGACCCATCATAGCGAACCTCCCATTCCACA
ACTCAGCATCCGAAGTCATGAACCCATCCGATTTAGACTCCACGCTGACA
CCTTTAAACAAAGGAACCAGGGACGCAACCGAAAGCAGAACACTGGTCCC
CAAGAACCAGGCAACTCCACCGTCTGATAACTGGGCAAACACATCCTGAC
CCTTGGATAGCTCCACCGCCAATGCAGCCACGAACCCAATCATCGCGAGC
CTCCCGTTTATCCTCTCCGGTGCCGGCCCGCTGAACGCAAACACGTCAGA
GAACTTCGTGCTTATACGCGGTAGCTTTGGTGGCTGAGTTGATTGATCCT
TCTGCTGCTCATTCTTAGCCATGCAGCGCACTGATAA
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