CB304769

Overview
NameCB304769
Unique NameCB304769
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length548
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304769_ssr471 microsatellite CB304769_ssr471:471..485. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CB304769 vs. ExPASy Swiss-Prot
Match: B3GT4_ARATH (Probable beta-1,3-galactosyltransferase 4 OS=Arabidopsis thaliana GN=B3GALT4 PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.192e-37
Identity = 78/122 (63.93%), Postives = 93/122 (76.23%), Query Frame = -3
Query:   34 GIESASHKSFMSKKWTLLLCIGCFCAGMLFSDRMWTVPEVRVVSRGAGFEDEKLKLVSEGCDSVMKNVKREPAEILGEVSKTHHAIQALDKTISNLEMELAAARATQESIINGSPLSDNLKI 399
            G+E ++ KSF+SKKWTL LCIG FCAG+LFSDRMW  PE  VVSR     DE+L+L SE CDS  K +KRE  +ILG+V K+  AIQ LDKTIS LE ELA ARA QESI+NGSP+SD+ K+
Sbjct:    9 GLELSASKSFVSKKWTLFLCIGFFCAGILFSDRMWPEPESNVVSRDTVASDERLRLESEDCDSSKKGLKRESKDILGDVYKSPDAIQTLDKTISKLETELADARAAQESIMNGSPVSDDFKL 130          
BLAST of CB304769 vs. ExPASy Swiss-Prot
Match: B3GT2_ARATH (Probable beta-1,3-galactosyltransferase 2 OS=Arabidopsis thaliana GN=B3GALT2 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.141e-33
Identity = 68/118 (57.63%), Postives = 91/118 (77.12%), Query Frame = -3
Query:   40 SHKSFMSKKWTLLLCIGCFCAGMLFSDRMWTVPEVRVVSRGAGFEDEKLKLVSEGCDS---VMKNVKREPAEILGEVSKTHHAIQALDKTISNLEMELAAARATQESIINGSPLSDNL 384
            S +SF+S+KWT+LLC+G FC GM F++RMW +PE + +S  +  E E+LKLVSEGC+      K VKR+P  + GEV+ TH A+Q LDKTIS+LEMELAAAR+ QES+ NG+PLSD++
Sbjct:   10 SSRSFVSRKWTILLCLGSFCVGMFFTNRMWNIPESKGMSHPSVTEAERLKLVSEGCNPKALYQKEVKRDPQALFGEVANTHIALQTLDKTISSLEMELAAARSVQESLQNGAPLSDDM 127          
BLAST of CB304769 vs. ExPASy Swiss-Prot
Match: B3GT3_ARATH (Probable beta-1,3-galactosyltransferase 3 OS=Arabidopsis thaliana GN=B3GALT3 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.652e-33
Identity = 72/132 (54.55%), Postives = 96/132 (72.73%), Query Frame = -3
Query:   37 MTWKSRGGIESASHKSFMSKKWTLLLCIGCFCAGMLFSDRMWTVPEVRVVSR-GAGFEDEKLKLVSEGCDS---VMKNVKREPAEILGEVSKTHHAIQALDKTISNLEMELAAARATQESIINGSPLSDNLK 420
            M+ K +G  E    +S +SKKWT LLC G FC G+LF+DRMW +PE + + R     E E+LKL+SEGCD      K V R+P  + GEVSKTH+AIQ LDKTIS+LEMELAAAR+ QES++NG+P+S++++
Sbjct:    1 MSTKIKG--ELFPSRSLVSKKWTFLLCFGSFCFGILFTDRMWIIPESKDMPRPSVSTEAERLKLISEGCDPKTLYQKEVNRDPQALFGEVSKTHNAIQTLDKTISSLEMELAAARSAQESLVNGAPISNDME 130          
BLAST of CB304769 vs. ExPASy Swiss-Prot
Match: B3GT1_ARATH (Probable beta-1,3-galactosyltransferase 1 OS=Arabidopsis thaliana GN=B3GALT1 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.034e-11
Identity = 48/129 (37.21%), Postives = 72/129 (55.81%), Query Frame = -3
Query:   37 MTWKSRGGIESASHKSFMSKKWTLLLCIGCFCAGMLFSDRMWT-VPEVRVVSRGAGFEDEKLKLVSEGCDSVMKNVKREPAEILGEVSKTHHAIQALDKTISNLEMELAAARATQESIINGSPLSDNLK 420
            M++K+RG   + + ++ +S+     +C+  FC GM F++RMW  VPE R +SR +     KL L S  CD   KNV          +   ++ I  LDK+ISNLEM+L AARA +ES+     +S+  K
Sbjct:    1 MSFKNRGDY-NFTPRNVVSRNSVFFMCLASFCLGMFFTNRMWNIVPEARGISRLS-----KLSLSSSDCDK--KNV----------LDYGNNTIGILDKSISNLEMKLVAARAERESLSGKFNISNEAK 111          
The following BLAST results are available for this feature:
BLAST of CB304769 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
B3GT4_ARATH3.192e-3763.93Probable beta-1,3-galactosyltransferase 4 OS=Arabi... [more]
B3GT2_ARATH2.141e-3357.63Probable beta-1,3-galactosyltransferase 2 OS=Arabi... [more]
B3GT3_ARATH3.652e-3354.55Probable beta-1,3-galactosyltransferase 3 OS=Arabi... [more]
B3GT1_ARATH1.034e-1137.21Probable beta-1,3-galactosyltransferase 1 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_F08 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_F08 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304769 ID=CB304769; Name=CB304769; organism=Citrus sinensis; type=EST; length=548bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTAATTTTTAAGTTGTCAG
ACAAGGGAGAACCATTAATAATAGACTCCTGTGTGGCTCTTGCAGCAGCC
AATTCCATCTCCAAATTAGAGATTGTTTTATCCAGCGCTTGTATAGCATG
ATGAGTCTTTGAAACCTCTCCAAGAATTTCTGCTGGCTCACGCTTTACAT
TCTTCATAACCGAATCACAACCCTCTGAAACTAGTTTCAGTTTTTCATCT
TCAAACCCTGCTCCTCTTGATACAACTCTGACTTCGGGCACCGTCCACAT
TCTGTCAGAGAAGAGCATCCCTGCACAAAAACAACCAATACAAAGCAGAA
GTGTCCACTTTTTGGACATAAAACTCTTATGAGAAGCTGACTCAATTCCT
CCTCTACTCTTCCAAGTCATTTCGCTCAAAATTTTCTCTCTTCAAAAACC
AATCAAACAGCTACAAACATCCAAACCAAACCAAAAGCTAAATCAAACAA
ATACCCATTTCAAATCTCAATTCAAACAACTCCGCAGACCCAATTTCC
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