CB304771

Overview
NameCB304771
Unique NameCB304771
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig356 contig Csv1_Contig356:1..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPR4_ARATH (ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic OS=Arabidopsis thaliana GN=CLPR4 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.235e-36
Identity = 72/92 (78.26%), Postives = 84/92 (91.30%), Query Frame = -3
Query:  408 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKSPEDHGVVSDLKKAQLI 683
            IMIKQPI R +GQATDVEIARKEIK++K E+VKLY+KH GK+PEQIEAD++RPKYFSP+EAVEYGIIDKV+Y E+  +D GVVSDLKKAQLI
Sbjct:  214 IMIKQPIARFQGQATDVEIARKEIKHIKTEMVKLYSKHIGKSPEQIEADMKRPKYFSPTEAVEYGIIDKVVYNERGSQDRGVVSDLKKAQLI 305          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_YEREN (ATP-dependent Clp protease proteolytic subunit OS=Yersinia enterocolitica GN=clpP PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.665e-14
Identity = 37/70 (52.86%), Postives = 50/70 (71.43%), Query Frame = -3
Query:  474 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKV 683
            +MI QP+G  +GQATD+EI  KEI  VK+ + +L AKH GK+ E+IE D  R ++ S  EAVEYG++D V
Sbjct:  133 VMIHQPLGGFQGQATDIEIHAKEILKVKSRMNELMAKHTGKSLEEIERDTERDRFLSADEAVEYGLVDSV 202          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_YERE8 (ATP-dependent Clp protease proteolytic subunit OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=clpP PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.665e-14
Identity = 37/70 (52.86%), Postives = 50/70 (71.43%), Query Frame = -3
Query:  474 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKV 683
            +MI QP+G  +GQATD+EI  KEI  VK+ + +L AKH GK+ E+IE D  R ++ S  EAVEYG++D V
Sbjct:  133 VMIHQPLGGFQGQATDIEIHAKEILKVKSRMNELMAKHTGKSLEEIERDTERDRFLSADEAVEYGLVDSV 202          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_PROMH (ATP-dependent Clp protease proteolytic subunit OS=Proteus mirabilis (strain HI4320) GN=clpP PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.481e-14
Identity = 37/76 (48.68%), Postives = 57/76 (75.00%), Query Frame = -3
Query:  456 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVLYTEKS 683
            +MI QP+G  +GQATD++I  +EI  VK+ + +L A+H GK+ E+IE D  R ++ S +EA+EYG++DKV YT++S
Sbjct:  133 VMIHQPLGGYQGQATDIQIHAQEILKVKSRMNELMAQHTGKSIEEIERDTERDRFLSANEALEYGLVDKV-YTQRS 207          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_ERWCT (ATP-dependent Clp protease proteolytic subunit OS=Erwinia carotovora subsp. atroseptica GN=clpP PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.481e-14
Identity = 38/70 (54.29%), Postives = 50/70 (71.43%), Query Frame = -3
Query:  474 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKV 683
            +MI QP+G  +GQATD+EI  KEI  VKA++ +L AKH G+  E IE D  R ++ S SEAVEYG++D V
Sbjct:  133 VMIHQPLGGFQGQATDIEIHAKEILKVKAKMNELMAKHTGQPLEAIERDTERDRFLSASEAVEYGLVDSV 202          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_AZOSE (ATP-dependent Clp protease proteolytic subunit OS=Azoarcus sp. (strain EbN1) GN=clpP PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.937e-14
Identity = 36/71 (50.70%), Postives = 53/71 (74.65%), Query Frame = -3
Query:  471 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 683
            +MI QP+G  +GQA+D+EI  +EI  ++A+L ++ AKH G+  EQIE D  R ++ S ++AVEYGI+DKVL
Sbjct:  136 VMIHQPLGGFQGQASDIEIHAREILGIRAKLNEMLAKHTGQPIEQIEKDTDRDRFMSAADAVEYGIVDKVL 206          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_EDWI9 (ATP-dependent Clp protease proteolytic subunit OS=Edwardsiella ictaluri (strain 93-146) GN=clpP PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.947e-13
Identity = 36/71 (50.70%), Postives = 49/71 (69.01%), Query Frame = -3
Query:  471 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 683
            +MI QP+G  +GQATD+EI  KEI ++KA +  L AKH G+  E IE D  R ++ S  +AVEYG++D VL
Sbjct:  132 VMIHQPLGGFQGQATDIEIHAKEILSIKARMNTLMAKHSGQPIEVIERDTERDRFMSAQDAVEYGLVDAVL 202          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_SODGM (ATP-dependent Clp protease proteolytic subunit OS=Sodalis glossinidius (strain morsitans) GN=clpP PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.848e-13
Identity = 36/71 (50.70%), Postives = 49/71 (69.01%), Query Frame = -3
Query:  471 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 683
            +MI QP+G  +GQATD+EI  +EI  VKA + +L AKH G+  E IE D  R ++ S  EAV+YG++D VL
Sbjct:  120 VMIHQPLGGFQGQATDIEIHAREILKVKARMNELMAKHTGQPLEVIERDTERDRFLSAPEAVDYGLVDSVL 190          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_SALTY (ATP-dependent Clp protease proteolytic subunit OS=Salmonella typhimurium GN=clpP PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.848e-13
Identity = 35/71 (49.30%), Postives = 49/71 (69.01%), Query Frame = -3
Query:  471 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 683
            +MI QP+G  +GQATD+EI  +EI  VK  + +L A H G++ EQIE D  R ++ S  EAVEYG++D +L
Sbjct:  133 VMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203          
BLAST of CB304771 vs. ExPASy Swiss-Prot
Match: CLPP_SALTI (ATP-dependent Clp protease proteolytic subunit OS=Salmonella typhi GN=clpP PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.848e-13
Identity = 35/71 (49.30%), Postives = 49/71 (69.01%), Query Frame = -3
Query:  471 IMIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIIDKVL 683
            +MI QP+G  +GQATD+EI  +EI  VK  + +L A H G++ EQIE D  R ++ S  EAVEYG++D +L
Sbjct:  133 VMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSIL 203          
The following BLAST results are available for this feature:
BLAST of CB304771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
CLPR4_ARATH3.235e-3678.26ATP-dependent Clp protease proteolytic subunit-rel... [more]
CLPP_YEREN2.665e-1452.86ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_YERE82.665e-1452.86ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PROMH3.481e-1448.68ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ERWCT3.481e-1454.29ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_AZOSE5.937e-1450.70ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_EDWI92.947e-1350.70ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SODGM3.848e-1350.70ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SALTY3.848e-1349.30ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SALTI3.848e-1349.30ATP-dependent Clp protease proteolytic subunit OS=... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_F11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_F11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304771 ID=CB304771; Name=CB304771; organism=Citrus sinensis; type=EST; length=685bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAAAAGCAACTGTTGGGCA
TTGCATATACTGGAATACTCTAATTTATTCAATGGTGTCGACACCACTGG
TGTCTGATGTAAAAGAATCATTGATATTACATGCTTGGACACGCATGTAA
ATAACGTGCATGGATGAAATAAAAGTACATTCCATAAATCCACACACTTC
GGTAGCAACATTTTATCTTACCAAAACCTATCTTCATTCTGACCCATATT
GCTTCCCCTCTTCTTGCCGAATGCATTGAGATCGGCATCGCCATTACCTC
ATTCAAAACCACTACTTTTCAGCTTTGTTTGGACATTGTCGATTCAATCT
ACCTATACTTCCACTGAATACTCCAAGAAACCACCAGTCCGAGTTTTCCT
ACAGTTAAATCAGTTGTGCCTTCTTCAGGTCAGAAACAACTCCATGGTCT
TCCGGGCTTTTTTCAGTATACAGTACCTTATCTATGATGCCGTATTCAAC
AGCCTCACTGGGACTAAAATATTTTGGACGCCTTATGTCAGCCTCAATCT
GCTCAGGAGTTTTTCCAAAATGCTTTGCATAGAGTTTAACCAACTCTGCC
TTCACATTCTTTATTTCTTTTCTGGCAATTTCGACATCTGTTGCTTGACC
TTCAATCCTCCCAATTGGCTGCTTTATCATGATTG
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