CB304785

Overview
NameCB304785
Unique NameCB304785
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length465
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304785 vs. ExPASy Swiss-Prot
Match: HGD_ARATH (Homogentisate 1,2-dioxygenase OS=Arabidopsis thaliana GN=HGO PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 2.425e-17
Identity = 36/43 (83.72%), Postives = 40/43 (93.02%), Query Frame = -3
Query:  335 ITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFS 463
            +T TMAFMFES LIPR+C WALESPF+DHDYYQCWIGL+SHFS
Sbjct:  399 LTGTMAFMFESALIPRVCHWALESPFLDHDYYQCWIGLKSHFS 441          
BLAST of CB304785 vs. ExPASy Swiss-Prot
Match: HGD_ORYSJ (Homogentisate 1,2-dioxygenase OS=Oryza sativa subsp. japonica GN=HGO PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.471e-14
Identity = 34/56 (60.71%), Postives = 44/56 (78.57%), Query Frame = -3
Query:  296 ITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFSYEEADNGSDGELP 463
            ++ T+AFMFES LIPR+C WAL+SP  D DYYQCWIGL+SHFS++  + G+  E P
Sbjct:  414 LSGTLAFMFESALIPRVCQWALDSPSRDLDYYQCWIGLKSHFSHD--NGGATSEEP 467          
The following BLAST results are available for this feature:
BLAST of CB304785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
HGD_ARATH2.425e-1783.72Homogentisate 1,2-dioxygenase OS=Arabidopsis thali... [more]
HGD_ORYSJ1.471e-1460.71Homogentisate 1,2-dioxygenase OS=Oryza sativa subs... [more]
back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_H02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_H02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304785 ID=CB304785; Name=CB304785; organism=Citrus sinensis; type=EST; length=465bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCATAAAGGACACACACCA
TACATATACACATTTTTTAAAATTTTTTTACATCAATTATATATGGACAT
CCAAGTTTTTATCAGTACTTAGTACATTCACAAACACACAAACAAAAGCT
ATATATAACCCAATCATACATGGGGGATTAATCGCAAATTTTTTACCTTG
GGGGGTTATAAATACTCGCCCATCAATTACCGGAGAAGCTCTCGTGCCTG
GGGACCAAATCAGGGGCACAATATCCTCTGGTCCATGTCCCACATTGGCA
ACTCCCCATCGCTTCCATTATCTGCTTCTTCATACGAAAAATGAGATCTT
AATCCAATCCAGCACTGATAATAATCATGATCCATAAAGGGAGACTCGAG
AGCCCAAGGGCAGATTCTAGGAATTAAACATGATTCAAACATAAAAGCCA
TAGTATCAGTGATCT
back to top