CB304792

Overview
NameCB304792
Unique NameCB304792
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length580
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304792_ssr322 microsatellite CB304792_ssr322:322..337. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9198 contig Csv1_Contig9198:917..1496. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304792 vs. ExPASy Swiss-Prot
Match: AAT3_ARATH (Aspartate aminotransferase, chloroplastic OS=Arabidopsis thaliana GN=ASP3 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.345e-14
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = -1
Query:  455 AFMTKDYHIYMTSDGRISMAGLSSKTVPHLADAIHAAVT 571
            +FMTK+YHIYMTSDGRISMAGLSSKTVPHLADAIHA VT
Sbjct:  408 SFMTKEYHIYMTSDGRISMAGLSSKTVPHLADAIHAVVT 446          
BLAST of CB304792 vs. ExPASy Swiss-Prot
Match: AAT2_ARATH (Aspartate aminotransferase, cytoplasmic isozyme 1 OS=Arabidopsis thaliana GN=ASP2 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.137e-13
Identity = 35/38 (92.11%), Postives = 38/38 (100.00%), Query Frame = -1
Query:  455 FMTKDYHIYMTSDGRISMAGLSSKTVPHLADAIHAAVT 568
            FMTK++HIYMTSDGRISMAGLSSKTVPHLADA+HAAVT
Sbjct:  365 FMTKEFHIYMTSDGRISMAGLSSKTVPHLADAMHAAVT 402          
BLAST of CB304792 vs. ExPASy Swiss-Prot
Match: AATC_DAUCA (Aspartate aminotransferase, cytoplasmic OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.218e-13
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = -1
Query:  455 FMTKDYHIYMTSDGRISMAGLSSKTVPHLADAIHAAVT 568
            FMT +YHIY+TSDGRISMAGLSS+TVPHLADAIHAAVT
Sbjct:  365 FMTNEYHIYLTSDGRISMAGLSSRTVPHLADAIHAAVT 402          
BLAST of CB304792 vs. ExPASy Swiss-Prot
Match: AATC_ORYSJ (Aspartate aminotransferase, cytoplasmic OS=Oryza sativa subsp. japonica GN=Os01g0760600 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.385e-12
Identity = 33/39 (84.62%), Postives = 37/39 (94.87%), Query Frame = -1
Query:  455 AFMTKDYHIYMTSDGRISMAGLSSKTVPHLADAIHAAVT 571
            AFM ++YHIYMTSDGRISMAGLS +T+PHLADAIHAAVT
Sbjct:  366 AFMRQEYHIYMTSDGRISMAGLSGRTIPHLADAIHAAVT 404          
BLAST of CB304792 vs. ExPASy Swiss-Prot
Match: AAT1_MEDSA (Aspartate aminotransferase 1 OS=Medicago sativa GN=AAT-1 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.264e-12
Identity = 33/42 (78.57%), Postives = 38/42 (90.48%), Query Frame = -1
Query:  446 AFMTKDYHIYMTSDGRISMAGLSSKTVPHLADAIHAAVTLVS 571
            + +TK+YHIY+TSDGRISMAGLSSKTVPHLA AIHA VT V+
Sbjct:  377 SILTKEYHIYLTSDGRISMAGLSSKTVPHLAHAIHAVVTRVA 418          
The following BLAST results are available for this feature:
BLAST of CB304792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
AAT3_ARATH7.345e-1492.31Aspartate aminotransferase, chloroplastic OS=Arabi... [more]
AAT2_ARATH2.137e-1392.11Aspartate aminotransferase, cytoplasmic isozyme 1 ... [more]
AATC_DAUCA6.218e-1389.47Aspartate aminotransferase, cytoplasmic OS=Daucus ... [more]
AATC_ORYSJ1.385e-1284.62Aspartate aminotransferase, cytoplasmic OS=Oryza s... [more]
AAT1_MEDSA5.264e-1278.57Aspartate aminotransferase 1 OS=Medicago sativa GN... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_H12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_H12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304792 ID=CB304792; Name=CB304792; organism=Citrus sinensis; type=EST; length=580bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAATTCAGGGACCTATTTGT
AACAAATGGGAGAATCTGGGGCTTTATTCGAAAATTACAAAAATAGGGAC
CCGAATACGGATTACAGCATTAAAATAGCAAACTCACGGGCATTGTATAT
GTTTCTTAATGAATAAACGCTTTTATTCAAATACTATACCTTCCTGCCTT
TCTGGTCTCTTGGAGAAGTTGAACGCAACTTGGTATTCAGTACTAAAATA
ATATGACTAAAATCCCTTTGGTAGCATACGACTCTTTCAACTACCAGATT
CTAGCATTTAGTTACTAACCTTTTATTTATTTATTTATTTCCTGAGGTAA
AATTATTACAACAAAACAGAAACGAAGAACCCACCAACATGATAAAAGCC
TCCGCGATGTCTGCTGGACAGAGAAATATTTTGGCAACAGAATTAGGAAA
CAAGTGTAACAGCTGCATGAATTGCATCTGCAAGATGTGGGACTGTTTTT
GAGCTCAGACCCGCCATGCTAATCCTCCCATCAGAGGTCATGTAGATATG
ATAGTCTTTAGTCATGAAGGCACTTGCTGA
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