CB304805

Overview
NameCB304805
Unique NameCB304805
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length564
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2887 contig Csv1_Contig2887:203..761. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304805 vs. ExPASy Swiss-Prot
Match: MBF1B_ARATH (Multiprotein-bridging factor 1b OS=Arabidopsis thaliana GN=MBF1B PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 2.822e-47
Identity = 94/113 (83.19%), Postives = 107/113 (94.69%), Query Frame = -1
Query:  226 KDERVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTRLERALGVKLR 564
            +DE+ VNAARR+GADIETVRK +AG+NKAASS TSLNT+KLD+DTENL+HDRVP+ELKKAI+QAR +KKLTQSQLA LINEKPQVIQEYESGKAIPNQQIL++LERALG KLR
Sbjct:   27 RDEKTVNAARRSGADIETVRKFNAGSNKAASSGTSLNTKKLDDDTENLSHDRVPTELKKAIMQARGEKKLTQSQLAHLINEKPQVIQEYESGKAIPNQQILSKLERALGAKLR 139          
BLAST of CB304805 vs. ExPASy Swiss-Prot
Match: MBF1A_ARATH (Multiprotein-bridging factor 1a OS=Arabidopsis thaliana GN=MBF1A PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 2.822e-47
Identity = 94/113 (83.19%), Postives = 106/113 (93.81%), Query Frame = -1
Query:  226 KDERVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTRLERALGVKLR 564
            +DE+ VNAARR+GADIETVRK +AGTNKAASS TSLNT+ LD+DTENL H+RVP+ELKKAI+QAR DKKLTQSQLAQ+INEKPQVIQEYESGKAIPNQQIL++LERALG KLR
Sbjct:   27 RDEKTVNAARRSGADIETVRKFNAGTNKAASSGTSLNTKMLDDDTENLTHERVPTELKKAIMQARTDKKLTQSQLAQIINEKPQVIQEYESGKAIPNQQILSKLERALGAKLR 139          
BLAST of CB304805 vs. ExPASy Swiss-Prot
Match: EDF1_HUMAN (Endothelial differentiation-related factor 1 OS=Homo sapiens GN=EDF1 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.684e-26
Identity = 64/123 (52.03%), Postives = 80/123 (65.04%), Query Frame = -1
Query:  196 KDERVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTRLERALGVKLRXXXXXXGINK 564
            K ++ + AA+R G D+ET +K  AG NK    S + NT KLD +TE L HDRV  E+ K I Q R  K LTQ  LA  INEKPQVI +YESG+AIPN Q+L ++ERA+G+KLR       I K
Sbjct:   23 KSKQAILAAQRRGEDVETSKKWAAGQNK--QHSITKNTAKLDRETEELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRGKDIGKPIEK 143          
BLAST of CB304805 vs. ExPASy Swiss-Prot
Match: EDF1_BOVIN (Endothelial differentiation-related factor 1 OS=Bos taurus GN=EDF1 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.684e-26
Identity = 64/123 (52.03%), Postives = 80/123 (65.04%), Query Frame = -1
Query:  196 KDERVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTRLERALGVKLRXXXXXXGINK 564
            K ++ + AA+R G D+ET +K  AG NK    S + NT KLD +TE L HDRV  E+ K I Q R  K LTQ  LA  INEKPQVI +YESG+AIPN Q+L ++ERA+G+KLR       I K
Sbjct:   23 KSKQAILAAQRRGEDVETSKKWAAGQNK--QHSITKNTAKLDRETEELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRGKDIGKPIEK 143          
BLAST of CB304805 vs. ExPASy Swiss-Prot
Match: MBF1C_ARATH (Multiprotein-bridging factor 1c OS=Arabidopsis thaliana GN=MBF1C PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.118e-26
Identity = 58/115 (50.43%), Postives = 86/115 (74.78%), Query Frame = -1
Query:  226 KDERVVNAARRAGADIETVRKSHAGTNKAASSSTS--LNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTRLERALGVKLR 564
            +D + VNAA R G  ++TV+K  AG+NK   S+    +NT+KL+E+TE  A DRV +E++  I +AR +KK++Q+ LA+ INE+ QV+QEYE+GKA+PNQ +L ++E+ LGVKLR
Sbjct:   29 RDPKAVNAALRNGVAVQTVKKFDAGSNKKGKSTAVPVINTKKLEEETEPAAMDRVKAEVRLMIQKARLEKKMSQADLAKQINERTQVVQEYENGKAVPNQAVLAKMEKVLGVKLR 143          
BLAST of CB304805 vs. ExPASy Swiss-Prot
Match: EDF1_CHICK (Endothelial differentiation-related factor 1 homolog OS=Gallus gallus GN=EDF1 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.044e-25
Identity = 61/113 (53.98%), Postives = 78/113 (69.03%), Query Frame = -1
Query:  226 KDERVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTRLERALGVKLR 564
            K ++ V AA+R G D+ET +K  AG NK      + NT KLD +TE L HDRVP E+ K I Q R  K +TQ  LA  INEKPQVI +YESG+AIPN Q++ ++ERA+G+KLR
Sbjct:   23 KSKQAVLAAQRRGEDVETSKKWAAGQNK--QHFITKNTAKLDRETEELHHDRVPLEVGKVIQQGRQSKGMTQKDLATKINEKPQVIADYESGRAIPNNQVMGKIERAIGLKLR 133          
BLAST of CB304805 vs. ExPASy Swiss-Prot
Match: EDF1_RAT (Endothelial differentiation-related factor 1 OS=Rattus norvegicus GN=Edf1 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.363e-25
Identity = 63/123 (51.22%), Postives = 80/123 (65.04%), Query Frame = -1
Query:  196 KDERVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTRLERALGVKLRXXXXXXGINK 564
            K ++ + AA+R G D+ET +K  AG NK    S + NT KLD +TE L HDRV  E+ K I + R  K LTQ  LA  INEKPQVI +YESG+AIPN Q+L ++ERA+G+KLR       I K
Sbjct:   23 KSKQAILAAQRRGEDVETSKKWAAGQNK--QHSITKNTAKLDRETEELHHDRVTLEVGKVIQRGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRGKDIGKPIEK 143          
BLAST of CB304805 vs. ExPASy Swiss-Prot
Match: EDF1_MOUSE (Endothelial differentiation-related factor 1 OS=Mus musculus GN=Edf1 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.363e-25
Identity = 63/123 (51.22%), Postives = 80/123 (65.04%), Query Frame = -1
Query:  196 KDERVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTRLERALGVKLRXXXXXXGINK 564
            K ++ + AA+R G D+ET +K  AG NK    S + NT KLD +TE L HDRV  E+ K I + R  K LTQ  LA  INEKPQVI +YESG+AIPN Q+L ++ERA+G+KLR       I K
Sbjct:   23 KSKQAILAAQRRGEDVETSKKWAAGQNK--QHSITKNTAKLDRETEELHHDRVTLEVGKVIQRGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRGKDIGKPIEK 143          
BLAST of CB304805 vs. ExPASy Swiss-Prot
Match: EDF1_DANRE (Endothelial differentiation-related factor 1 homolog OS=Danio rerio GN=edf1 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.036e-25
Identity = 60/113 (53.10%), Postives = 77/113 (68.14%), Query Frame = -1
Query:  226 KDERVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTRLERALGVKLR 564
            K ++ V AA+R G  +ET +K  AG NK      + NT KLD +TE L+H RVP E+ K I Q R +K LTQ  LA  INEKPQ+I EYE GKAIPN Q++ ++ERA+G+KLR
Sbjct:   22 KSKQAVTAAQRKGEAVETSKKWAAGQNK--QHVVTKNTAKLDRETEELSHQRVPLEVGKVIQQGRQNKGLTQKDLATKINEKPQIIAEYECGKAIPNNQVMGKIERAIGLKLR 132          
BLAST of CB304805 vs. ExPASy Swiss-Prot
Match: EDF1_XENLA (Endothelial differentiation-related factor 1 homolog OS=Xenopus laevis GN=edf1 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.965e-25
Identity = 58/113 (51.33%), Postives = 77/113 (68.14%), Query Frame = -1
Query:  226 KDERVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTRLERALGVKLR 564
            K ++ + AA+R G ++ET +K  AG NK    + + NT KLD +TE L HDRVP E+ K I Q R  K +TQ  LA  INEKPQVI +YE GKAIPN Q++ ++ER +G+KLR
Sbjct:   23 KSKQAITAAQRRGEEVETSKKWSAGQNK--QHTITRNTAKLDRETEELHHDRVPLEVGKVIQQGRQGKGMTQKDLATKINEKPQVIADYECGKAIPNNQVMGKIERVIGLKLR 133          
The following BLAST results are available for this feature:
BLAST of CB304805 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
MBF1B_ARATH2.822e-4783.19Multiprotein-bridging factor 1b OS=Arabidopsis tha... [more]
MBF1A_ARATH2.822e-4783.19Multiprotein-bridging factor 1a OS=Arabidopsis tha... [more]
EDF1_HUMAN4.684e-2652.03Endothelial differentiation-related factor 1 OS=Ho... [more]
EDF1_BOVIN4.684e-2652.03Endothelial differentiation-related factor 1 OS=Bo... [more]
MBF1C_ARATH6.118e-2650.43Multiprotein-bridging factor 1c OS=Arabidopsis tha... [more]
EDF1_CHICK1.044e-2553.98Endothelial differentiation-related factor 1 homol... [more]
EDF1_RAT1.363e-2551.22Endothelial differentiation-related factor 1 OS=Ra... [more]
EDF1_MOUSE1.363e-2551.22Endothelial differentiation-related factor 1 OS=Mu... [more]
EDF1_DANRE3.036e-2553.10Endothelial differentiation-related factor 1 homol... [more]
EDF1_XENLA3.965e-2551.33Endothelial differentiation-related factor 1 homol... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_B09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_B09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304805 ID=CB304805; Name=CB304805; organism=Citrus sinensis; type=EST; length=564bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGCAAGAAAAGATAAAAGG
CTTAATAGATTCACAGTCATGACAAGAGCAACAGTCAAGGACACTAGTTA
TGTGCCGAGCCATAACCATAGGAGAAAACATTCATATACAGCACCCATTT
TGAAGACTCAACAACAGGACACAACATCAAGTCCTGGTAGCAGTTTTTAT
TTATCCCTCCTCCTCACTTCTTTCCTCGAAGCTTCACACCAAGGGCCCTC
TCCAGCCTGGTAAGTATCTGCTGATTTGGAATGGCTTTTCCTGATTCATA
TTCCTGAATCACCTGGGGCTTCTCATTGATCAACTGAGCAAGTTGAGACT
GGGTAAGTTTCTTATCATTTCGTGCCTGAACAATGGCTTTCTTGAGTTCA
CTAGGCACTCGATCATGAGCAAGGTTCTCTGTATCTTCATCAAGCTTCCT
GGTGTTCAGAGAAGTGCTACTCGAGGCAGCCTTGTTTGTGCCAGCATGTG
ATTTTCTGACAGTCTCGATATCGGCACCGGCGCGGCGGGCAGCGTTAACG
ACCCTCTCGTCCTT
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