CB304810

Overview
NameCB304810
Unique NameCB304810
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304810_ssr316 microsatellite CB304810_ssr316:316..330. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1537 contig Csv1_Contig1537:149..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304810 vs. ExPASy Swiss-Prot
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.032e-23
Identity = 51/60 (85.00%), Postives = 55/60 (91.67%), Query Frame = -1
Query:  414 EAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNNTVNEAQ 593
            +AF  +GDI +SKIINDRETGRSRGFGFVTF+DEKSMRDAIEGMNGQ LDGRN TVNEAQ
Sbjct:   24 QAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQ 83          
BLAST of CB304810 vs. ExPASy Swiss-Prot
Match: GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.672e-22
Identity = 49/59 (83.05%), Postives = 56/59 (94.92%), Query Frame = -1
Query:  414 AFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNNTVNEAQ 590
            AF  YG++L+SKIINDRETGRSRGFGFVTF+DEKSM+DAIEGMNGQ+LDGR+ TVNEAQ
Sbjct:   27 AFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of CB304810 vs. ExPASy Swiss-Prot
Match: GRP7_ARATH (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=GRP7 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.490e-22
Identity = 48/59 (81.36%), Postives = 56/59 (94.92%), Query Frame = -1
Query:  414 AFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNNTVNEAQ 590
            AF  YGD+++SKIINDRETGRSRGFGFVTF+DEK+M+DAIEGMNGQ+LDGR+ TVNEAQ
Sbjct:   27 AFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of CB304810 vs. ExPASy Swiss-Prot
Match: GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.262e-21
Identity = 47/59 (79.66%), Postives = 56/59 (94.92%), Query Frame = -1
Query:  414 AFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNNTVNEAQ 590
            AF  +G++++SKIINDRETGRSRGFGFVTF+DEKSM+DAIEGMNGQ+LDGR+ TVNEAQ
Sbjct:   27 AFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of CB304810 vs. ExPASy Swiss-Prot
Match: GRP1_SORBI (Glycine-rich RNA-binding protein 1 (Fragment) OS=Sorghum bicolor GN=GRP1 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.117e-19
Identity = 46/61 (75.41%), Postives = 51/61 (83.61%), Query Frame = -1
Query:  414 HEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNNTVNEAQ 596
            H AF  YG++LESKII DRET RSRGFGFVTF  E++MR AIEGMNG+ LDGRN TVNEAQ
Sbjct:    4 HSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQ 64          
BLAST of CB304810 vs. ExPASy Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.612e-19
Identity = 44/59 (74.58%), Postives = 51/59 (86.44%), Query Frame = -1
Query:  414 AFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNNTVNEAQ 590
            AF  YGD+++SKII DRETGRSRGFGFVTF  +++MR AIE MNGQ+LDGRN TVNEAQ
Sbjct:   25 AFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQ 83          
BLAST of CB304810 vs. ExPASy Swiss-Prot
Match: GRP8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=GRP8 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.612e-19
Identity = 44/58 (75.86%), Postives = 52/58 (89.66%), Query Frame = -1
Query:  414 FGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNNTVNEAQ 587
            F  +GD+++SKIINDRE+GRSRGFGFVTF+DEK+MRDAIE MNG+ LDGR  TVNEAQ
Sbjct:   26 FSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQ 83          
BLAST of CB304810 vs. ExPASy Swiss-Prot
Match: GRP10_BRANA (Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.612e-19
Identity = 43/58 (74.14%), Postives = 52/58 (89.66%), Query Frame = -1
Query:  414 FGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNNTVNEAQ 587
            F  +G++++SKIINDRETGRSRGFGFVTF+DEKSM+DAI+ MNG+ LDGR  TVNEAQ
Sbjct:   26 FSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQ 83          
BLAST of CB304810 vs. ExPASy Swiss-Prot
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.051e-18
Identity = 44/59 (74.58%), Postives = 50/59 (84.75%), Query Frame = -1
Query:  414 AFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNNTVNEAQ 590
            AF +YG+IL+SK+I DRETGRSRGFGFVTF  E SM DAIE MNG+ LDGRN TVN+AQ
Sbjct:   27 AFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQ 85          
BLAST of CB304810 vs. ExPASy Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.162e-17
Identity = 41/60 (68.33%), Postives = 50/60 (83.33%), Query Frame = -1
Query:  414 EAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNNTVNEAQ 593
            +AF  +G +++SK+I DRETGRSRGFGFVTF  E+SM DAIE MNG+ LDGRN TVN+AQ
Sbjct:   26 QAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQ 85          
The following BLAST results are available for this feature:
BLAST of CB304810 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
GRP1_DAUCA7.032e-2385.00Glycine-rich RNA-binding protein OS=Daucus carota ... [more]
GRP1_SINAL2.672e-2283.05Glycine-rich RNA-binding protein GRP1A OS=Sinapis ... [more]
GRP7_ARATH3.490e-2281.36Glycine-rich RNA-binding protein 7 OS=Arabidopsis ... [more]
GRP2_SINAL2.262e-2179.66Glycine-rich RNA-binding protein GRP2A OS=Sinapis ... [more]
GRP1_SORBI2.117e-1975.41Glycine-rich RNA-binding protein 1 (Fragment) OS=S... [more]
GRP_HORVU3.612e-1974.58Glycine-rich RNA-binding protein blt801 OS=Hordeum... [more]
GRP8_ARATH3.612e-1975.86Glycine-rich RNA-binding protein 8 OS=Arabidopsis ... [more]
GRP10_BRANA3.612e-1974.14Glycine-rich RNA-binding protein 10 OS=Brassica na... [more]
GRPA_MAIZE1.051e-1874.58Glycine-rich RNA-binding, abscisic acid-inducible ... [more]
GRP2_SORBI1.162e-1768.33Glycine-rich RNA-binding protein 2 OS=Sorghum bico... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_C06 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_C06 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304810 ID=CB304810; Name=CB304810; organism=Citrus sinensis; type=EST; length=596bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTACGATTAACCAAACAGGG
AGATCGAAACAACACAGGATAACAGGAACCGATCAAAACGACACAACATA
ACCCAAGGAAAATATCAAAACACGAAACCATAGCATAGCTCCTAATTTAT
CCTAAACAACACTAATTCCTCCAGCTGCCGCCATCAAAAGCACCGCTCCT
TGAGTATCGGGAACCACCATCACCGCCATATCCACCATCACGGCTGTAAC
CACCTTCACGGCGGCCACCATATCCTCCACCACCGCCACCTCCGTATCCG
CGGCTCCCACCGTATCCACCACCACCACCACTTTCACGGCGTCCACCACC
TCCATATCCGCCACCGCCGCGGCTTCCGTAACCACCACCGCCACCGCCAC
CGCTTCCGCGGGACTGGGCCTCGTTGACTGTGTTGTTACGGCCGTCGAGG
TTCTGGCCGTTCATGCCTTCGATCGCGTCCCTCATCGACTTCTCATCGCG
GAAGGTAACGAATCCAAATCCTCTGGATCTTCCAGTCTCGCGATCGTTAA
TTATCTTCGATTCAAGGATATCGCCGTAAGCACCGAAGGCCTCATG
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