CB304814

Overview
NameCB304814
Unique NameCB304814
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length593
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13727 contig Csv1_Contig13727:1..590. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304814 vs. ExPASy Swiss-Prot
Match: RL362_ARATH (60S ribosomal protein L36-2 OS=Arabidopsis thaliana GN=RPL36B PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.303e-34
Identity = 73/97 (75.26%), Postives = 83/97 (85.57%), Query Frame = -3
Query:  211 KGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELFRVGKDKRALKVAKRKLGTHKRAKKKREEMFNALRKSRAPGGG--EKKK 495
            KGH+VT++EL PRP  RKGKTSKR  F+R +I+EVAG APYEKRITEL +VGKDKRALKVAKRKLGTHKRAK+KREEM + LRK R+ GGG  EKKK
Sbjct:   16 KGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGGGATEKKK 112          
BLAST of CB304814 vs. ExPASy Swiss-Prot
Match: RL363_ARATH (60S ribosomal protein L36-3 OS=Arabidopsis thaliana GN=RPL36C PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.008e-34
Identity = 73/97 (75.26%), Postives = 83/97 (85.57%), Query Frame = -3
Query:  211 KGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELFRVGKDKRALKVAKRKLGTHKRAKKKREEMFNALRKSRAPGGG--EKKK 495
            KGH+VTK+E PPRP +RKGKTSKR  F+R +I+EVAG APYEKRITEL +VGKDKRALKVAKRKLGTHKRAK+KREEM + LRK R+ G G  EKKK
Sbjct:   12 KGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGAGASEKKK 108          
BLAST of CB304814 vs. ExPASy Swiss-Prot
Match: RL361_ARATH (60S ribosomal protein L36-1 OS=Arabidopsis thaliana GN=RPL36A PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.547e-33
Identity = 72/97 (74.23%), Postives = 81/97 (83.51%), Query Frame = -3
Query:  214 KGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELFRVGKDKRALKVAKRKLGTHKRAKKKREEMFNALRKSRAPGG---GEKK 495
            KGH+VT++EL PRP  RKGKTSKR  F+R +IREVAG APYEKRITEL +VGKDKRALKVAKRKLGTHKRAK+KREEM + LRK R+ GG    EKK
Sbjct:   16 KGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSLGGAAAAEKK 112          
BLAST of CB304814 vs. ExPASy Swiss-Prot
Match: RL36_ENTCP (60S ribosomal protein L36 OS=Enteromorpha compressa GN=RL36 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.036e-26
Identity = 61/92 (66.30%), Postives = 70/92 (76.09%), Query Frame = -3
Query:  220 KGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELFRVGKDKRALKVAKRKLGTHKRAKKKREEMFNALRKSRAPGGGE 495
            KGH VTKK   PRP+ RKG  S+RV  VR V+REVAG+APYE+R+ EL +VGKDKRALK+ KRKLGTH R KKKREEM   LRK +A   GE
Sbjct:   10 KGHQVTKKAGTPRPSRRKGFLSQRVKKVRAVVREVAGWAPYERRVMELLKVGKDKRALKMCKRKLGTHMRGKKKREEMAGVLRKMQAASKGE 101          
BLAST of CB304814 vs. ExPASy Swiss-Prot
Match: RL36_DAUCA (60S ribosomal protein L36 OS=Daucus carota GN=RPL36 PE=3 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.146e-25
Identity = 60/88 (68.18%), Postives = 69/88 (78.41%), Query Frame = -3
Query:  268 NSQILVSLLD*TKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELFRVGKDKRALKVAKRKLGTHKRAKKKRE 531
            N+ + V L    KGHIVTKKEL PRP+DRKGKTSKR HFVR +IREVAGF PYEKRITEL +VGKDKRALKV + K+G H +  K+ E
Sbjct:    7 NTGLFVGL---NKGHIVTKKELAPRPSDRKGKTSKRTHFVRNLIREVAGFXPYEKRITELLKVGKDKRALKVRQEKVG-HSQESKEEE 90          
BLAST of CB304814 vs. ExPASy Swiss-Prot
Match: RL36A_SCHPO (60S ribosomal protein L36-A OS=Schizosaccharomyces pombe GN=rpl36a PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 9.079e-23
Identity = 50/86 (58.14%), Postives = 69/86 (80.23%), Query Frame = -3
Query:  238 KGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELFRVGKDKRALKVAKRKLGTHKRAKKKREEMFNALRKSR 495
            KG ++TK++LP RP+ RKG+ SKR  FVR+++REVAGFAPYE+R+ EL R  +DKRA K+AK++LGT KRAK K EE+ + ++ SR
Sbjct:   11 KGKVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAKKRLGTLKRAKGKIEELTSVIQSSR 96          
BLAST of CB304814 vs. ExPASy Swiss-Prot
Match: RL36_IXOSC (60S ribosomal protein L36 OS=Ixodes scapularis GN=RpL36 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.549e-22
Identity = 52/94 (55.32%), Postives = 64/94 (68.09%), Query Frame = -3
Query:  214 KGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELFRVGKDKRALKVAKRKLGTHKRAKKKREEMFNALRKSRAPGGGEKK 495
            KGH VTK E  PRP+ RKG  SK   FVR +IREV GFAP+E+R  EL +V KDKRALK  K++LGTH R K+KR+E+ N L   R     ++K
Sbjct:   13 KGHKVTKNEYKPRPSRRKGALSKHTRFVRDLIREVCGFAPFERRAMELLKVSKDKRALKFIKKRLGTHLRGKRKRDELSNVLVAQRKAAAHKEK 106          
BLAST of CB304814 vs. ExPASy Swiss-Prot
Match: RL36B_SCHPO (60S ribosomal protein L36-B OS=Schizosaccharomyces pombe GN=rpl36b PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.885e-22
Identity = 50/86 (58.14%), Postives = 67/86 (77.91%), Query Frame = -3
Query:  238 KGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELFRVGKDKRALKVAKRKLGTHKRAKKKREEMFNALRKSR 495
            KG  +TK++LP RP+ RKG  SKR  FVR+++REVAGFAPYE+R+ EL R  +DKRA K+AK++LGT KRAK K EE+ + ++ SR
Sbjct:   11 KGKTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAKKRLGTLKRAKGKIEELTSVIQSSR 96          
BLAST of CB304814 vs. ExPASy Swiss-Prot
Match: RL36_XENTR (60S ribosomal protein L36 OS=Xenopus tropicalis GN=rpl36 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 8.498e-21
Identity = 49/86 (56.98%), Postives = 60/86 (69.77%), Query Frame = -3
Query:  238 KGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELFRVGKDKRALKVAKRKLGTHKRAKKKREEMFNALRKSR 495
            KGH VTK    PR   R+G+ +K   FVR +IREV GFAPYE+R  EL +V KDKRALK  K+++GTH RAK+KREE+ N L   R
Sbjct:   13 KGHRVTKNVTKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRIGTHIRAKRKREELSNVLAAMR 98          
BLAST of CB304814 vs. ExPASy Swiss-Prot
Match: RL36_XENLA (60S ribosomal protein L36 OS=Xenopus laevis GN=rpl36 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 8.498e-21
Identity = 49/86 (56.98%), Postives = 60/86 (69.77%), Query Frame = -3
Query:  238 KGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELFRVGKDKRALKVAKRKLGTHKRAKKKREEMFNALRKSR 495
            KGH VTK    PR   R+G+ +K   FVR +IREV GFAPYE+R  EL +V KDKRALK  K+++GTH RAK+KREE+ N L   R
Sbjct:   13 KGHRVTKNVTKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRIGTHIRAKRKREELSNVLAAMR 98          
The following BLAST results are available for this feature:
BLAST of CB304814 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RL362_ARATH2.303e-3475.2660S ribosomal protein L36-2 OS=Arabidopsis thalian... [more]
RL363_ARATH3.008e-3475.2660S ribosomal protein L36-3 OS=Arabidopsis thalian... [more]
RL361_ARATH2.547e-3374.2360S ribosomal protein L36-1 OS=Arabidopsis thalian... [more]
RL36_ENTCP1.036e-2666.3060S ribosomal protein L36 OS=Enteromorpha compress... [more]
RL36_DAUCA1.146e-2568.1860S ribosomal protein L36 OS=Daucus carota GN=RPL3... [more]
RL36A_SCHPO9.079e-2358.1460S ribosomal protein L36-A OS=Schizosaccharomyces... [more]
RL36_IXOSC1.549e-2255.3260S ribosomal protein L36 OS=Ixodes scapularis GN=... [more]
RL36B_SCHPO5.885e-2258.1460S ribosomal protein L36-B OS=Schizosaccharomyces... [more]
RL36_XENTR8.498e-2156.9860S ribosomal protein L36 OS=Xenopus tropicalis GN... [more]
RL36_XENLA8.498e-2156.9860S ribosomal protein L36 OS=Xenopus laevis GN=rpl... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_D03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_D03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304814 ID=CB304814; Name=CB304814; organism=Citrus sinensis; type=EST; length=593bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACAAACAATTAAATTTTTCT
CTGGAAAAAGGTAAAGGTCATTGTAGCACTCAAATTGACATCTTTAACTC
AGTTTTTGAAATGAAGGGGAAAAAAAGGCAAACAACATAGGCTAAAACAC
TGTGCTAAATTTAATAACCCAAGTTCAGGTGAACAAAACATCTAGCAAAG
TTATGCATCACTTCTTCTTCTCTCCACCTCCAGGGGCCCTACTCTTGCGA
AGGGCATTAAACATCTCCTCCCGCTTCTTCTTTGCCCTCTTGTGAGTGCC
AAGCTTTCTCTTTGCAACCTTCAGTGCCCTCTTGTCCTTGCCGACTCTAA
AAAGCTCAGTGATCCTTTTCTCATAGGGTGCAAAGCCAGCAACTTCCCTA
ATCACAGTCCTCACGAAGTGGACCCTTTTGCTTGTTTTCCCTTTGCGATC
TGCTGGGCGTGGCGGCAGTTCCTTCTTCGTCACAATATGACCCTTTGTTT
AATCCAACAAAGAGACCAGTATTTGGCTGTTTCGGAGCCATCACCTCCGA
CGAAACTGAGTTGCCGCGGAAACCTAAGATGAGTTGGAGTCCC
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