CB304826

Overview
NameCB304826
Unique NameCB304826
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length467
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304826 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.495e-30
Identity = 61/102 (59.80%), Postives = 72/102 (70.59%), Query Frame = -3
Query:  160 RGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMTYVHSVLNQGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 465
            RGP+QL+ N NY  AG+AIGFDGL +PE VA D   SFK A+WFWMT VHSV+NQGF  T + ING  EC G+N+DQ  DR++ Y  YC  FGV PG  L C
Sbjct:  187 RGPLQLSWNYNYALAGQAIGFDGLGNPEKVATDVNTSFKAAMWFWMTNVHSVMNQGFGATTKAINGALECNGQNQDQANDRIQFYKKYCADFGVAPGDNLTC 288          
BLAST of CB304826 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 3.331e-30
Identity = 61/102 (59.80%), Postives = 71/102 (69.61%), Query Frame = -3
Query:  160 RGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMTYVHSVLNQGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 465
            RGP+Q++ N NY  AG+ IGFDGL  P+ VA+D  ISFKTALWFWM  VH V+ QGF  TIR ING  EC G+N   V  RV  Y DYC++FGVDPG  L C
Sbjct:  187 RGPLQISWNYNYGPAGQNIGFDGLRDPDRVAQDPTISFKTALWFWMNNVHQVMLQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVDPGGNLYC 288          
BLAST of CB304826 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 4.351e-30
Identity = 60/102 (58.82%), Postives = 71/102 (69.61%), Query Frame = -3
Query:  160 RGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMTYVHSVLNQGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 465
            RGP+Q++ N NY  AG+ IGFDGL  P+ VA+D  ISFKTALWFWM  VH V++QGF  TIR ING  EC G+N   V  RV  Y DYC++FGV PG  L C
Sbjct:  184 RGPLQISWNFNYGPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWMNNVHQVMSQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVSPGGNLYC 285          
BLAST of CB304826 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 5.319e-28
Identity = 59/102 (57.84%), Postives = 69/102 (67.65%), Query Frame = -3
Query:  160 RGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMTYVHSVLNQGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 465
            RGPIQL+ N NY  AG A  FDGL +PETV+ D V+SFKTALW+WM +V  V+NQGF  TIR ING  EC G N   V  RV  YT+YC++ GV  G  L C
Sbjct:  169 RGPIQLSWNFNYGPAGSANNFDGLGAPETVSNDVVVSFKTALWYWMQHVRPVINQGFGATIRAINGALECDGANPTTVQARVNYYTEYCRQLGVATGDNLTC 270          
BLAST of CB304826 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.021e-27
Identity = 57/102 (55.88%), Postives = 67/102 (65.69%), Query Frame = -3
Query:  160 RGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMTYVHSVLNQGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 465
            RGP+Q++ N NY  AGRAIGFDGL  P  VARD V++FK ALWFWM  VH V+ QGF  T R +    ECGG N  Q+  RV  Y  YC++ GVDPG  L C
Sbjct:  168 RGPLQISWNYNYGPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMNSVHGVVPQGFGATTRAMQRALECGGNNPAQMNARVGYYRQYCRQLGVDPGPNLTC 269          
BLAST of CB304826 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 4.502e-27
Identity = 58/102 (56.86%), Postives = 68/102 (66.67%), Query Frame = -3
Query:  160 RGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMTYVHSVLNQGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 465
            RGP+Q++ N NY  AGR IGF+GL  P  VA+D VI+FKTALWFWM  VH V+ QGF  TIR ING  EC G N  Q+  RV  Y  YC++  VDPG  L C
Sbjct:  179 RGPLQISWNYNYGPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWMNNVHGVMPQGFGATIRAINGALECNGNNPAQMNARVGYYKQYCQQLRVDPGPNLIC 280          
BLAST of CB304826 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.003e-26
Identity = 56/104 (53.85%), Postives = 71/104 (68.27%), Query Frame = -3
Query:  160 RGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMTYVHS--VLNQGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 465
            RGP+Q++ N NY  AG++IGFDGL  P+ VAR  V++F+TALW+W   VH   V  QGF  TIR ING  EC G+N   V +RV  Y  +C++FGVDPGS L C
Sbjct:  168 RGPLQISWNFNYGPAGQSIGFDGLGDPDAVARSPVLAFQTALWYWTNNVHDAFVSGQGFGATIRAINGALECDGKNPTAVSNRVAYYQQFCQQFGVDPGSNLTC 271          
BLAST of CB304826 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 2.918e-26
Identity = 57/106 (53.77%), Postives = 71/106 (66.98%), Query Frame = -3
Query:  160 RGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFW----MTYVHSVLNQGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 465
            RGP+QL+ N NYI+AG+ + FDGLN P+ V RD +ISFKT+LWFW    + YV    NQGF  TIR ING  EC G N  Q++ RV  Y +YC + GV PG+ L C
Sbjct:  145 RGPMQLSWNYNYIDAGKELHFDGLNDPDIVGRDPIISFKTSLWFWIRKGVQYVILDPNQGFGATIRIINGGQECDGHNTAQMMARVGYYQEYCAQLGVSPGNNLPC 250          
BLAST of CB304826 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 3.944e-23
Identity = 52/102 (50.98%), Postives = 64/102 (62.75%), Query Frame = -3
Query:  160 RGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMTYVHSVLNQGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 465
            RGPIQL+ N NY   G+++  + L  PE V+ +  ++F+T LWFWM  V  VLNQGF  TIR ING  EC G N   V  R+R Y DYC + GVDPG  L C
Sbjct:  168 RGPIQLSWNYNYGACGQSLNLNLLGQPELVSSNPTVAFRTGLWFWMNSVRPVLNQGFGATIRAING-MECNGGNSGAVNARIRYYRDYCGQLGVDPGPNLSC 268          
BLAST of CB304826 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.455e-19
Identity = 55/123 (44.72%), Postives = 64/123 (52.03%), Query Frame = -3
Query:  160 RGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSVL---------------NQGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 465
            RGPIQ++ N NY   GRAIG D LN+P+ VA D VISFKTALWFWMT        H V+                 GF      ING  ECG    ++V DR+  Y  YC   GV PG  L+C
Sbjct:  191 RGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVIIGRWNPSSADRAANRLPGFGVITNIINGGLECGRGTDNRVQDRIGFYRRYCSILGVTPGDNLDC 313          
The following BLAST results are available for this feature:
BLAST of CB304826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
CHIP_BETVU1.495e-3059.80Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHI5_ORYSJ3.331e-3059.80Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_ORYSJ4.351e-3058.82Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_PHAVU5.319e-2857.84Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHIB_MAIZE2.021e-2755.88Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHIA_MAIZE4.502e-2756.86Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHI6_ORYSJ1.003e-2653.85Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_DIOJA2.918e-2653.77Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHI4_BRANA3.944e-2350.98Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHIT_SOLTU3.455e-1944.72Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_F01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_F01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304826 ID=CB304826; Name=CB304826; organism=Citrus sinensis; type=EST; length=467bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGATCAGGTACAAGAAAAT
TATTCCGTCAGAGTTACCAAACAGAGAAAGTTGTTTGAAATAACTCTGGC
TTATTGTGATACAATATAATACATATACTGTAATATTTTTTGTACAAAAT
ATCTATTCAGCATTCAAGACGTGATCCAGGATCAACACCAAATCTTTTGC
AATAATCAGTGTAACGCCTAACACGATCCAGAACTTGGTCGCGGTTTCGG
CCACCGCATTCAGCAGGACCATTAATTTTCCGAATTGTTTCACTAAAACC
TTGGTTTAGTACTGAGTGCACATATGTCATCCAAAACCACAAAGCAGTCT
TGAAAGATATGACACGGTCCCTGGCTACTGTTTCCGGAGAGTTCAGACCG
TCGAAACCGATGGCCCTTCCCGCCTCTATGTAGTTTCCATTTCCGGTGAG
CTGAATCGGTCCCCGGC
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