CB304838

Overview
NameCB304838
Unique NameCB304838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length547
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_METTE (Chaperone protein dnaJ OS=Methanosarcina thermophila GN=dnaJ PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.439e-21
Identity = 50/77 (64.94%), Postives = 57/77 (74.03%), Query Frame = -2
Query:  154 AAGTDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEY 384
            A   DYY  L + ++AT ++IK  YRKLA KYHPD NK PGAEEKFKEIS AY VLSD EKR  YDRFG AG+ G+Y
Sbjct:    2 ATTRDYYEILGLSRDATPEDIKKSYRKLALKYHPDRNKEPGAEEKFKEISEAYAVLSDPEKRAQYDRFGHAGINGQY 78          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_SYNJA (Chaperone protein dnaJ OS=Synechococcus sp. (strain JA-3-3Ab) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 7.144e-21
Identity = 46/71 (64.79%), Postives = 58/71 (81.69%), Query Frame = -2
Query:  160 DYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTG 372
            DYY  L V ++++ +EIK  YR+LA KYHPD+NK PGAE++FKEI+ AYEVLSDDE R  YDRFGEAG++G
Sbjct:    4 DYYEILGVSRDSSKEEIKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDDELRARYDRFGEAGLSG 74          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_STRR6 (Chaperone protein dnaJ OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.330e-21
Identity = 48/88 (54.55%), Postives = 61/88 (69.32%), Query Frame = -2
Query:  112 TDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEYDGLSNTSQGVDPFE 375
            T++Y  L V +NA+  EIK  YRKL+ KYHPDINK PGAE+K+KE+  AYE LSDD+KR  YD++G AG  G + G  N + G   FE
Sbjct:    4 TEFYDRLGVSKNASADEIKKAYRKLSKKYHPDINKEPGAEDKYKEVQEAYETLSDDQKRAAYDQYGAAGANGGFGGF-NGAGGFGGFE 90          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_MYCPE (Chaperone protein dnaJ OS=Mycoplasma penetrans GN=dnaJ PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.079e-20
Identity = 47/90 (52.22%), Postives = 63/90 (70.00%), Query Frame = -2
Query:  103 DYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEYDGLSNTSQGVDPFELYS 372
            DYY  L V ++AT  +IK+ +RK A +YHPD NK P AEEKFKE++ AYEVLSD +KR  YDRFG  G+ G++ G      G DPF++++
Sbjct:    6 DYYEVLGVSKDATDDQIKSAFRKKAMQYHPDRNKEPDAEEKFKEVNQAYEVLSDPDKRANYDRFGHEGVDGQFGG----GAGFDPFDIFN 91          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_SYNJB (Chaperone protein dnaJ OS=Synechococcus sp. GN=dnaJ PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.715e-20
Identity = 45/71 (63.38%), Postives = 58/71 (81.69%), Query Frame = -2
Query:  160 DYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTG 372
            DYY  L V ++++ +EIK  YR+LA KYHPD+NK PGAEE+FKEI+ AYEVLSD+E +  YDRFGEAG++G
Sbjct:    4 DYYEILGVSRDSSKEEIKRAYRRLARKYHPDVNKEPGAEERFKEINRAYEVLSDNELKARYDRFGEAGLSG 74          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_STRPN (Chaperone protein dnaJ OS=Streptococcus pneumoniae GN=dnaJ PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 2.715e-20
Identity = 44/76 (57.89%), Postives = 56/76 (73.68%), Query Frame = -2
Query:  148 TDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEYDG 375
            T++Y  L V +NA+  EIK  YRKL+ KYHPDINK PGAE+K+KE+  AYE LSDD+KR  YD++G AG  G + G
Sbjct:    4 TEFYDRLGVSKNASADEIKKAYRKLSKKYHPDINKEPGAEDKYKEVQEAYETLSDDQKRAAYDQYGAAGANGGFGG 79          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_MICAN (Chaperone protein dnaJ OS=Microcystis aeruginosa (strain NIES-843) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.545e-20
Identity = 50/90 (55.56%), Postives = 62/90 (68.89%), Query Frame = -2
Query:  112 TDYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEYDGLSNTSQG--VDPFE 375
            TDYY  L V ++A  ++IK  YR+LA KYHPD+NK PGAEE FKEI+ AYE+LS+ E R  YDRFGEAG++G   G    + G   D FE
Sbjct:    3 TDYYEILGVSRDAGKEDIKRAYRRLARKYHPDVNKEPGAEEHFKEINRAYEILSEPETRNRYDRFGEAGVSGGAAGFDPDNMGGFADIFE 92          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_LACSS (Chaperone protein dnaJ OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.545e-20
Identity = 47/86 (54.65%), Postives = 59/86 (68.60%), Query Frame = -2
Query:  115 DYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEYDGLSNTSQGVDPF 372
            DYY  L V ++A+  EIK  YRKL+ KYHPDINK+P AE KFKE++ AYE LSD +KR  YD++G AGM G + G +   QG   F
Sbjct:    6 DYYDVLGVGRDASDDEIKKAYRKLSKKYHPDINKAPDAEAKFKEVTEAYEALSDPQKRAAYDQYGHAGMNGGFGGGAGAGQGFGGF 91          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_LACSK (Chaperone protein dnaJ OS=Lactobacillus sakei GN=dnaJ PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.545e-20
Identity = 47/86 (54.65%), Postives = 59/86 (68.60%), Query Frame = -2
Query:  115 DYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEYDGLSNTSQGVDPF 372
            DYY  L V ++A+  EIK  YRKL+ KYHPDINK+P AE KFKE++ AYE LSD +KR  YD++G AGM G + G +   QG   F
Sbjct:    6 DYYDVLGVGRDASDDEIKKAYRKLSKKYHPDINKAPDAEAKFKEVTEAYEALSDPQKRAAYDQYGHAGMNGGFGGGAGAGQGFGGF 91          
BLAST of CB304838 vs. ExPASy Swiss-Prot
Match: DNAJ_GLOVI (Chaperone protein dnaJ OS=Gloeobacter violaceus GN=dnaJ PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.545e-20
Identity = 46/75 (61.33%), Postives = 58/75 (77.33%), Query Frame = -2
Query:  148 DYYSTLNVCQNATLQEIKTFYRKLACKYHPDINKSPGAEEKFKEISFAYEVLSDDEKRFVYDRFGEAGMTGEYDG 372
            D Y TLNV ++A+ ++IK  YRKLA +YHPD+NK  GAE+ FKE+S AYEVLSDD++R  YDRFGEAG+ G   G
Sbjct:    4 DLYETLNVSRDASKEDIKRAYRKLARQYHPDVNKDAGAEDTFKELSRAYEVLSDDDQRARYDRFGEAGLNGGVGG 78          
The following BLAST results are available for this feature:
BLAST of CB304838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_METTE1.439e-2164.94Chaperone protein dnaJ OS=Methanosarcina thermophi... [more]
DNAJ_SYNJA7.144e-2164.79Chaperone protein dnaJ OS=Synechococcus sp. (strai... [more]
DNAJ_STRR69.330e-2154.55Chaperone protein dnaJ OS=Streptococcus pneumoniae... [more]
DNAJ_MYCPE2.079e-2052.22Chaperone protein dnaJ OS=Mycoplasma penetrans GN=... [more]
DNAJ_SYNJB2.715e-2063.38Chaperone protein dnaJ OS=Synechococcus sp. GN=dna... [more]
DNAJ_STRPN2.715e-2057.89Chaperone protein dnaJ OS=Streptococcus pneumoniae... [more]
DNAJ_MICAN3.545e-2055.56Chaperone protein dnaJ OS=Microcystis aeruginosa (... [more]
DNAJ_LACSS3.545e-2054.65Chaperone protein dnaJ OS=Lactobacillus sakei subs... [more]
DNAJ_LACSK3.545e-2054.65Chaperone protein dnaJ OS=Lactobacillus sakei GN=d... [more]
DNAJ_GLOVI3.545e-2061.33Chaperone protein dnaJ OS=Gloeobacter violaceus GN... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_G04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_G04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304838 ID=CB304838; Name=CB304838; organism=Citrus sinensis; type=EST; length=547bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAAAATTGAAGTTAATGC
CTCCGGCCTCACCCACTCCTCCAAAGAGCCCATCTGAACCACCAAAGAAT
GCACTATATAATTCAAAAGGATCCACCCCCTGTGAAGTGTTGCTCAATCC
ATCATATTCTCCAGTCATACCTGCCTCACCAAAGCGATCATATACAAATC
TTTTCTCATCATCTGAAAGGACCTCATACGCAAAACTTATCTCTTTGAAC
TTCTCTTCAGCTCCAGGACTCTTGTTGATATCCGGATGATACTTACAAGC
AAGCTTTCTGTAAAAGGTCTTGATCTCCTGCAACGTGGCATTCTGACAAA
CATTCAAAGTGGAATAGTAATCTGTACCAGCGGCCCTGATCATTCCCCTT
CGATGACTCCGATTATTGCCAAAACAATAATTCCATTTGAAACTGAAACT
CGTACTTAAATGAAGCTTCAAATTGACATAAAATGGACTAGCAATAACGG
GCATACTTCATAAGTTGGGGGCGTTAACAGGAAAAAAAAGGAGTCCC
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