CB304842

Overview
NameCB304842
Unique NameCB304842
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length547
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304842_ssr187 microsatellite CB304842_ssr187:187..198. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13803 contig Csv1_Contig13803:118..663. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.592e-24
Identity = 42/61 (68.85%), Postives = 51/61 (83.61%), Query Frame = -1 
Query:  251 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 433
            VRSLN AA+TT DRQAACNCLK A+ +I+G+  N+AAGLP +CGV +PYKISPSTDC  V+
Sbjct:   31 VRSLNNAAKTTADRQAACNCLKSAFNSIKGLNLNLAAGLPGKCGVSVPYKISPSTDCKSVK 91

HSP 2 Score: 38.891 bits (89), Expect = 2.592e-24
Identity = 16/21 (76.19%), Postives = 19/21 (90.48%), Query Frame = -3 
Query:  465 ITCGQVTASLAPCIPFLRTGG 527
            ITCGQV++SLAPCI +LR GG
Sbjct:    1 ITCGQVSSSLAPCINYLRAGG 21
[Close]
BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.665e-24
Identity = 37/61 (60.66%), Postives = 48/61 (78.69%), Query Frame = -1 
Query:  251 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 433
            +R++N  ARTTPDRQAACNCLK+   ++ G+ PN AA LP +CGV IPY+ISPST+C  V+
Sbjct:   57 IRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTNCANVK 117

HSP 2 Score: 44.669 bits (104), Expect = 5.665e-24
Identity = 17/26 (65.38%), Postives = 23/26 (88.46%), Query Frame = -3 
Query:  465 PVTNAITCGQVTASLAPCIPFLRTGG 542
            P+  AITCGQV+++LAPCIP++R GG
Sbjct:   22 PIAQAITCGQVSSNLAPCIPYVRGGG 47
[Close]
BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.682e-24
Identity = 38/61 (62.30%), Postives = 47/61 (77.05%), Query Frame = -1 
Query:  251 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 433
            +R++NG ARTT DRQ ACNCLK   G+I G+ PN AAGLP +CGV +PYKIS ST+C  V+
Sbjct:   55 IRTINGLARTTADRQTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTNCATVK 115

HSP 2 Score: 43.1282 bits (100), Expect = 9.682e-24
Identity = 18/25 (72.00%), Postives = 23/25 (92.00%), Query Frame = -3 
Query:  465 VTNAITCGQVTASLAPCIPFLRTGG 539
            V +AITCGQVT+SLAPCI ++R+GG
Sbjct:   21 VAHAITCGQVTSSLAPCIGYVRSGG 45
[Close]
BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.249e-23
Identity = 40/61 (65.57%), Postives = 47/61 (77.05%), Query Frame = -1 
Query:  251 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 433
            V+SLN AA+TTPDRQAAC CLK AY +I G+    AA  P +CGV IPYKISPSTDC +V+
Sbjct:   56 VKSLNSAAKTTPDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSKVQ 116

HSP 2 Score: 41.5874 bits (96), Expect = 1.249e-23
Identity = 17/27 (62.96%), Postives = 22/27 (81.48%), Query Frame = -3 
Query:  465 APVTNAITCGQVTASLAPCIPFLRTGG 545
            AP T A++CGQV++SLAPCI +L  GG
Sbjct:   20 APYTEALSCGQVSSSLAPCISYLTKGG 46
[Close]
BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUPE (Non-specific lipid-transfer protein 1 OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 8.533e-22
Identity = 37/61 (60.66%), Postives = 47/61 (77.05%), Query Frame = -1 
Query:  251 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 433
            +R++N  ARTTPDRQAACNCLK+   ++ G+ PN AA LP +CGV IPYKIS ST+C  V+
Sbjct:   31 IRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVHIPYKISASTNCATVK 91

HSP 2 Score: 39.2762 bits (90), Expect = 8.533e-22
Identity = 15/21 (71.43%), Postives = 20/21 (95.24%), Query Frame = -3 
Query:  465 ITCGQVTASLAPCIPFLRTGG 527
            ITCGQV+++LAPCIP++R GG
Sbjct:    1 ITCGQVSSALAPCIPYVRGGG 21
[Close]
BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP1_TOBAC (Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.110e-21
Identity = 40/61 (65.57%), Postives = 45/61 (73.77%), Query Frame = -1 
Query:  251 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 433
            V++L  +ARTT DRQ AC CLK A G I GI    AAGLPS CGV IPYKISPSTDC +V+
Sbjct:   54 VKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 114

HSP 2 Score: 41.2022 bits (95), Expect = 1.110e-21
Identity = 17/27 (62.96%), Postives = 21/27 (77.78%), Query Frame = -3 
Query:  465 APVTNAITCGQVTASLAPCIPFLRTGG 545
            AP   AITCGQVT++LAPC+ +LR  G
Sbjct:   19 APCAEAITCGQVTSNLAPCLAYLRNTG 45
[Close]
BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.183e-21
Identity = 34/61 (55.74%), Postives = 46/61 (75.41%), Query Frame = -1 
Query:  251 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 433
            ++++NG A+TTPDRQAACNCLK   G++ G+ P  A  LP +CGV +PYKIS ST+C  V+
Sbjct:   55 IKTINGLAKTTPDRQAACNCLKNLAGSVSGVNPGNAESLPGKCGVNVPYKISTSTNCATVK 115

HSP 2 Score: 39.2762 bits (90), Expect = 3.183e-21
Identity = 16/25 (64.00%), Postives = 22/25 (88.00%), Query Frame = -3 
Query:  465 VTNAITCGQVTASLAPCIPFLRTGG 539
            V +AITC QV+A+LAPCI ++R+GG
Sbjct:   21 VAHAITCSQVSANLAPCINYVRSGG 45
[Close]
BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUAR (Non-specific lipid-transfer protein 1 OS=Prunus armeniaca PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 4.142e-21
Identity = 37/61 (60.66%), Postives = 47/61 (77.05%), Query Frame = -1 
Query:  251 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 433
            +R++N  ARTTPDR+ ACNCLK+  G+I G+ PN AA LP +CGV IPYKIS ST+C  V+
Sbjct:   31 IRNVNNLARTTPDRRTACNCLKQLSGSISGVNPNNAAALPGKCGVNIPYKISASTNCATVK 91

HSP 2 Score: 36.965 bits (84), Expect = 4.142e-21
Identity = 15/21 (71.43%), Postives = 19/21 (90.48%), Query Frame = -3 
Query:  465 ITCGQVTASLAPCIPFLRTGG 527
            ITCGQV++SLAPCI ++R GG
Sbjct:    1 ITCGQVSSSLAPCIGYVRGGG 21
[Close]
BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.529e-20
Identity = 33/61 (54.10%), Postives = 45/61 (73.77%), Query Frame = -1 
Query:  251 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 433
            +R++N  A+TT DRQ ACNCLK+   ++ G+  N AA LP +CGV +PYKISPST+C  V+
Sbjct:   57 IRNINNLAKTTADRQTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTNCATVK 117

HSP 2 Score: 40.817 bits (94), Expect = 1.529e-20
Identity = 15/26 (57.69%), Postives = 22/26 (84.62%), Query Frame = -3 
Query:  465 PVTNAITCGQVTASLAPCIPFLRTGG 542
            P+  A+TCGQV+++LAPCI ++R GG
Sbjct:   22 PIAQALTCGQVSSNLAPCIAYVRGGG 47
[Close]
BLAST of CB304842 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLLC (Non-specific lipid-transfer protein 1 OS=Solanum lycopersicum GN=TSW12 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.615e-20
Identity = 37/61 (60.66%), Postives = 45/61 (73.77%), Query Frame = -1 
Query:  251 VRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCFRVR 433
            V++L G+A+TT DR+ AC CLK A   I+GI  N AAG+PS C V IPYKISPSTDC  V+
Sbjct:   54 VKNLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114

HSP 2 Score: 41.2022 bits (95), Expect = 2.615e-20
Identity = 17/27 (62.96%), Postives = 21/27 (77.78%), Query Frame = -3 
Query:  465 APVTNAITCGQVTASLAPCIPFLRTGG 545
            AP   A+TCGQVTA LAPC+P+L+  G
Sbjct:   19 APHAEALTCGQVTAGLAPCLPYLQGRG 45
The following BLAST results are available for this feature:
BLAST of CB304842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
LTP1_MORNI2.592e-2468.85Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP1_PRUDU5.665e-2460.66Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
NLTP_MALDO9.682e-2462.30Non-specific lipid-transfer protein OS=Malus domes... [more]
NLTP_HELAN1.249e-2365.57Non-specific lipid-transfer protein OS=Helianthus ... [more]
NLTP1_PRUPE8.533e-2260.66Non-specific lipid-transfer protein 1 OS=Prunus pe... [more]
NLTP1_TOBAC1.110e-2165.57Non-specific lipid-transfer protein 1 OS=Nicotiana... [more]
NLTP_PYRCO3.183e-2155.74Non-specific lipid-transfer protein OS=Pyrus commu... [more]
NLTP1_PRUAR4.142e-2160.66Non-specific lipid-transfer protein 1 OS=Prunus ar... [more]
NLTP_PRUAV1.529e-2054.10Non-specific lipid-transfer protein OS=Prunus aviu... [more]
NLTP1_SOLLC2.615e-2060.66Non-specific lipid-transfer protein 1 OS=Solanum l... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_H01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_H01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304842 ID=CB304842; Name=CB304842; organism=Citrus sinensis; type=EST; length=547bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAGATAATACCACAAAATAAC
TATAATTAATCACTCAAAACACAGATCGCGTTTACATATTTAATATGACA
TAAAAAGCAAATATACAAACTTGACATGAGAGTGAAACTCATACATGTGG
AGACTCGTTCGGACAAAGAAATTAACATAGATATTCTTTATTTATTTATT
CTTCTCAGTCAATCATACTTGGAAAGTCACAGAGCTCAAACTCAACTTCA
CCTGACCCTAAAGCAGTCGGTGCTGGGGCTGATCTTGTAAGGAATTCTGA
CTCCACATTGACTAGGAAGGCCAGCGGCAACATTAGGTTTGATGCCGCGG
ATTGTTCCGTAAGCTCGTTTCAAGCAGTTGCATGCAGCTTGGCGGTCAGG
GGTGGTTCTGGCGGCGCCGTTGAGAGACCTGACGCNNCTACAGCATGGCG
GTGGAGGAAAAACGCCCTCCAGTTCTCAAGAAAGGGATGCATGGAGCCAA
GGAGGCTGTCACCTGCCCGCATGTTATGGCATTAGTCACCGGGGCAG
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