CB304845

Overview
NameCB304845
Unique NameCB304845
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length426
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304845 vs. ExPASy Swiss-Prot
Match: FDH_ARATH (Formate dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=FDH1 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 2.047e-35
Identity = 66/76 (86.84%), Postives = 70/76 (92.11%), Query Frame = -1
Query:  199 GSYSGDVRNPQPAPKDHPWRYMPNQAVTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 426
            G YSGDV +PQPAPKDHPWRYMPNQA+TPH SGTTIDAQLRYAAG KDML+RYFKGEDFP +NYIVK GELAPQYR
Sbjct:  309 GGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQLRYAAGTKDMLERYFKGEDFPTENYIVKDGELAPQYR 384          
BLAST of CB304845 vs. ExPASy Swiss-Prot
Match: FDH_SOLTU (Formate dehydrogenase, mitochondrial OS=Solanum tuberosum GN=FDH1 PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 3.491e-35
Identity = 66/74 (89.19%), Postives = 69/74 (93.24%), Query Frame = -1
Query:  199 YSGDVRNPQPAPKDHPWRYMPNQAVTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 420
            YSGDV  PQPAPKDHPWRYMPNQA+TPH+SGTTIDAQLRYAAG KDMLDRYFKGEDFP +NYIVK GELAPQYR
Sbjct:  308 YSGDVWYPQPAPKDHPWRYMPNQAMTPHISGTTIDAQLRYAAGTKDMLDRYFKGEDFPAENYIVKDGELAPQYR 381          
BLAST of CB304845 vs. ExPASy Swiss-Prot
Match: FDH1_ORYSJ (Formate dehydrogenase 1, mitochondrial OS=Oryza sativa subsp. japonica GN=Os06g0486800 PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 1.123e-33
Identity = 64/74 (86.49%), Postives = 68/74 (91.89%), Query Frame = -1
Query:  199 YSGDVRNPQPAPKDHPWRYMPNQAVTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 420
            Y GDV  PQPAPKDHPWRYMPN A+TPH+SGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVK G+LA QY+
Sbjct:  303 YGGDVWFPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKEGQLASQYQ 376          
BLAST of CB304845 vs. ExPASy Swiss-Prot
Match: FDH_HORVU (Formate dehydrogenase, mitochondrial OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.502e-33
Identity = 63/74 (85.14%), Postives = 68/74 (91.89%), Query Frame = -1
Query:  199 YSGDVRNPQPAPKDHPWRYMPNQAVTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 420
            Y GDV  PQPAPKDHPWRYMPN A+TPH+SGTTIDAQLRYAAGVKDMLDRYFKGE+FPV+NYIVK GELA QY+
Sbjct:  304 YGGDVWFPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGEEFPVENYIVKEGELASQYK 377          
BLAST of CB304845 vs. ExPASy Swiss-Prot
Match: FDH2_ORYSJ (Formate dehydrogenase 2, mitochondrial OS=Oryza sativa subsp. japonica GN=Os06g0486900 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 7.279e-33
Identity = 63/74 (85.14%), Postives = 66/74 (89.19%), Query Frame = -1
Query:  199 YSGDVRNPQPAPKDHPWRYMPNQAVTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 420
            Y GDV  PQPAPKDHPWRYMPN A+TPH SGTTID QLRYAAGVKDMLDRYFKGEDFP QNYIVKAG+LA QY+
Sbjct:  305 YGGDVWFPQPAPKDHPWRYMPNHAMTPHCSGTTIDGQLRYAAGVKDMLDRYFKGEDFPAQNYIVKAGQLASQYQ 378          
BLAST of CB304845 vs. ExPASy Swiss-Prot
Match: FDH_PSESR (Formate dehydrogenase OS=Pseudomonas sp. (strain 101) PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 1.924e-17
Identity = 39/70 (55.71%), Postives = 51/70 (72.86%), Query Frame = -1
Query:  211 YSGDVRNPQPAPKDHPWRYMPNQAVTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELA 420
            Y+GDV  PQPAPKDHPWR MP   +TPH+SGTT+ AQ RYAAG +++L+ +F+G     +  IV+ G LA
Sbjct:  306 YAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGALA 375          
BLAST of CB304845 vs. ExPASy Swiss-Prot
Match: FDH1_YEAST (Formate dehydrogenase 1 OS=Saccharomyces cerevisiae GN=FDH1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.525e-14
Identity = 41/76 (53.95%), Postives = 53/76 (69.74%), Query Frame = -1
Query:  211 YSGDVRNPQPAPKDHPWRYMPNQ-----AVTPHVSGTTIDAQLRYAAGVKDMLDRYF-KGEDFPVQNYIVKAGELA 420
            Y GDV + QPAPKDHPWR M N+     A+T H+SGT++DAQ RYA GVK++L+ YF K  D+  Q+ IV+ G  A
Sbjct:  293 YGGDVWDKQPAPKDHPWRTMDNKDHVGNAMTVHISGTSLDAQKRYAQGVKNILNSYFSKKFDYRPQDIIVQNGSYA 368          
BLAST of CB304845 vs. ExPASy Swiss-Prot
Match: FDH_EMENI (Probable formate dehydrogenase OS=Emericella nidulans GN=aciA PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.397e-14
Identity = 40/76 (52.63%), Postives = 49/76 (64.47%), Query Frame = -1
Query:  211 YSGDVRNPQPAPKDHPWRYMPN-----QAVTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE-DFPVQNYIVKAGELA 420
            Y GDV  PQPAPK+HP RY  +      A  PH+SGT+IDAQ+RYA G K +LD YF G  D+  Q+ IV  G+ A
Sbjct:  292 YGGDVWFPQPAPKEHPLRYAEHPWGGGNATVPHMSGTSIDAQIRYANGTKAILDSYFSGRFDYQPQDLIVHGGDYA 367          
BLAST of CB304845 vs. ExPASy Swiss-Prot
Match: FDH2_YEAST (Formate dehydrogenase 2 OS=Saccharomyces cerevisiae GN=FDH2 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.883e-14
Identity = 40/76 (52.63%), Postives = 52/76 (68.42%), Query Frame = -1
Query:  211 YSGDVRNPQPAPKDHPWRYMPNQ-----AVTPHVSGTTIDAQLRYAAGVKDMLDRYF-KGEDFPVQNYIVKAGELA 420
            Y GDV + QPAPKDHPWR M N+     A+T H+SGT++ AQ RYA GVK++L+ YF K  D+  Q+ IV+ G  A
Sbjct:  293 YGGDVWDKQPAPKDHPWRTMDNKDHVGNAMTVHISGTSLHAQKRYAQGVKNILNSYFSKKFDYRPQDIIVQNGSYA 368          
BLAST of CB304845 vs. ExPASy Swiss-Prot
Match: FDH_PICAN (Formate dehydrogenase OS=Pichia angusta GN=FMDH PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.291e-13
Identity = 38/74 (51.35%), Postives = 51/74 (68.92%), Query Frame = -1
Query:  217 YSGDVRNPQPAPKDHPWRYMPNQ-----AVTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE-DFPVQNYIVKAGE 420
            Y GDV  PQPAPKDHPWR M N+     A+TPH SG+ IDAQ+RYA G K++L+ +F  + D+  Q+ I+  G+
Sbjct:  279 YGGDVWFPQPAPKDHPWRSMANKYGAGNAMTPHYSGSVIDAQVRYAQGTKNILESFFTQKFDYRPQDIILLNGK 352          
The following BLAST results are available for this feature:
BLAST of CB304845 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
FDH_ARATH2.047e-3586.84Formate dehydrogenase, mitochondrial OS=Arabidopsi... [more]
FDH_SOLTU3.491e-3589.19Formate dehydrogenase, mitochondrial OS=Solanum tu... [more]
FDH1_ORYSJ1.123e-3386.49Formate dehydrogenase 1, mitochondrial OS=Oryza sa... [more]
FDH_HORVU2.502e-3385.14Formate dehydrogenase, mitochondrial OS=Hordeum vu... [more]
FDH2_ORYSJ7.279e-3385.14Formate dehydrogenase 2, mitochondrial OS=Oryza sa... [more]
FDH_PSESR1.924e-1755.71Formate dehydrogenase OS=Pseudomonas sp. (strain 1... [more]
FDH1_YEAST1.525e-1453.95Formate dehydrogenase 1 OS=Saccharomyces cerevisia... [more]
FDH_EMENI3.397e-1452.63Probable formate dehydrogenase OS=Emericella nidul... [more]
FDH2_YEAST9.883e-1452.63Formate dehydrogenase 2 OS=Saccharomyces cerevisia... [more]
FDH_PICAN1.291e-1351.35Formate dehydrogenase OS=Pichia angusta GN=FMDH PE... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_H11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_H11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304845 ID=CB304845; Name=CB304845; organism=Citrus sinensis; type=EST; length=426bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCACAAAATGAAGTTACTC
ATTCCAGCTGGTTATTATTCCATTGGTAAATGGAGAGTTTACAAACATAG
GAACATTATTCCAGAAGGGACAAACATAGGATTATTCCAGAAGGGCCTGG
TCAACAGAAAATAAACTCAAACGATCAGTCTCTTCACACGTGAAATTATC
GATATTGAGGGGCCAGCTCCCCCGCCTTCACTATGTAATTTTGAACAGGA
AAATCTTCTCCCTTGAAGTATCTGTCAAGCATATCCTTGACTCCCGCAGC
ATAGCGTAGCTGTGCATCAATAGTGGTCCCAGAAACATGAGGGGTCACTG
CTTGATTTGGCATGTAACGCCAGGGATGGTCCTTTGGAGCTGGTTGTGGA
TTCCGAACATCACCACTATAACTACC
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