CB304849

Overview
NameCB304849
Unique NameCB304849
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length409
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:66..474. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CB304849 vs. ExPASy Swiss-Prot
Match: G3PC_ARATH (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Arabidopsis thaliana GN=GAPC PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 1.981e-11
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = -1 
Query:  311 IALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 409
            IALS KFVKLVSWYDNEWGYS+RVVDLIVHMSK
Sbjct:  305 IALSDKFVKLVSWYDNEWGYSSRVVDLIVHMSK 337
[Close]
BLAST of CB304849 vs. ExPASy Swiss-Prot
Match: G3PC_SINAL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Sinapis alba GN=GAPC PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 3.379e-11
Identity = 30/33 (90.91%), Postives = 31/33 (93.94%), Query Frame = -1 
Query:  311 IALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 409
            IALS  FVKLVSWYDNEWGYSTRVVDLI+HMSK
Sbjct:  305 IALSDNFVKLVSWYDNEWGYSTRVVDLIIHMSK 337
[Close]
BLAST of CB304849 vs. ExPASy Swiss-Prot
Match: G3PC_PINSY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pinus sylvestris GN=GAPC PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.764e-11
Identity = 30/35 (85.71%), Postives = 32/35 (91.43%), Query Frame = -1 
Query:  305 IALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 409
            IALS  FVKLVSWYDNEWGYS+RVVDLIVHM+ TQ
Sbjct:  306 IALSDNFVKLVSWYDNEWGYSSRVVDLIVHMAATQ 340
[Close]
BLAST of CB304849 vs. ExPASy Swiss-Prot
Match: G3PC_RANAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ranunculus acris GN=GAPC PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.832e-11
Identity = 30/35 (85.71%), Postives = 32/35 (91.43%), Query Frame = -1 
Query:  305 IALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 409
            IAL+   VKLVSWYDNEWGYS+RVVDLIVHMSKTQ
Sbjct:  304 IALNDNCVKLVSWYDNEWGYSSRVVDLIVHMSKTQ 338
The following BLAST results are available for this feature:
BLAST of CB304849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
G3PC_ARATH1.981e-1193.94Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_SINAL3.379e-1190.91Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PINSY5.764e-1185.71Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_RANAC9.832e-1185.71Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_A04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_A04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304849 ID=CB304849; Name=CB304849; organism=Citrus sinensis; type=EST; length=409bp
TTTTTNNTTTTTTTTTTTTTTTTTTTTTTTTTGGATGAAAAATTATAAAA
GCAAGTTTCCAATAAACAATTGTTTTCTCGCTAACAAAACATAAGTTGGT
TCACCAACTCTTCTTGCATACTACAAGGGAAAATCTAAGCACAACCCTGC
ATGAGCAGGTAAGGGTCTGGATAATGTCTTGGAAACAATTTTATTTAAAC
TCAGACCCTCTACATAGAAACACAAACACCACATTTAGCACAAAGAAACA
CCACACTTAGCACAACTAAGCGTGTTACATACTCAAGCCACGCCGAGTAA
GTTACTGGGTCTTCGACATGTGGACAATCAAATCCACCACACGAGTACTG
TAGCCCCACTCATTGTCATACCATGAGACAAGCTTCACAAATTTCTTACT
CAAAGCAAT
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