CB304852

Overview
NameCB304852
Unique NameCB304852
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1856 contig Csv1_Contig1856:774..1418. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304852 vs. ExPASy Swiss-Prot
Match: GOX2_ARATH (Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 OS=Arabidopsis thaliana GN=At3g14420 PE=1 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.210e-66
Identity = 127/150 (84.67%), Postives = 136/150 (90.67%), Query Frame = -3
Query:  194 WLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNPIVTHWDTPGAVARL 643
            WLQTIT LPILVKGVLT EDA +AIQ GAAGIIVSNHGARQLDYVPAT+ ALEEVV+A +GR+PVFLDGGVRRGTDVFKALALGASG+F+GRPV FSLA +GEAGVRKVLQMLRDEFELTMALSGCRSLKEI+RN I T WDTP   ARL
Sbjct:  218 WLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEWDTPRPSARL 367          
BLAST of CB304852 vs. ExPASy Swiss-Prot
Match: GOX_SPIOL (Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 3.520e-66
Identity = 127/152 (83.55%), Postives = 141/152 (92.76%), Query Frame = -3
Query:  194 WLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNPIVTHWDTPG--AVARL 643
            WLQTITSLPILVKGV+TAEDA LA+Q+GAAGIIVSNHGARQLDYVPAT+MALEEVV+AA+GR+PVFLDGGVRRGTDVFKALALGA+GVF+GRPV FSLA +GEAGV+KVLQM+RDEFELTMALSGCRSLKEI+R+ I   WD P   AVARL
Sbjct:  218 WLQTITSLPILVKGVITAEDARLAVQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAEGEAGVKKVLQMMRDEFELTMALSGCRSLKEISRSHIAADWDGPSSRAVARL 369          
BLAST of CB304852 vs. ExPASy Swiss-Prot
Match: GOX1_ARATH (Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 OS=Arabidopsis thaliana GN=At3g14415 PE=1 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 6.005e-66
Identity = 125/150 (83.33%), Postives = 137/150 (91.33%), Query Frame = -3
Query:  194 WLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNPIVTHWDTPGAVARL 643
            WLQTIT++PILVKGVLT EDA +AIQ GAAGIIVSNHGARQLDYVPAT+ ALEEVV+A +GRVPVFLDGGVRRGTDVFKALALGASG+F+GRPV F+LA +GEAGV+KVLQMLRDEFELTMALSGCRSL EITRN IVT WDTP  + RL
Sbjct:  218 WLQTITNMPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRVPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFALAAEGEAGVKKVLQMLRDEFELTMALSGCRSLSEITRNHIVTEWDTPRHLPRL 367          
BLAST of CB304852 vs. ExPASy Swiss-Prot
Match: HAOX1_MOUSE (Hydroxyacid oxidase 1 OS=Mus musculus GN=Hao1 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.630e-42
Identity = 82/134 (61.19%), Postives = 108/134 (80.60%), Query Frame = -3
Query:  242 WLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITR 643
            WL+ +TSLPI+VKG+L  +DA  A+++G  GI+VSNHGARQLD VPAT+  L E+V+A +G+V VFLDGGVR+GTDV KALALGA  VFVGRP+ + LA  GE GV+ VL++L++EF L MALSGC+++K I +
Sbjct:  224 WLRRLTSLPIVVKGILRGDDAKEAVKHGVDGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIIWGLAFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDK 357          
BLAST of CB304852 vs. ExPASy Swiss-Prot
Match: HAOX1_HUMAN (Hydroxyacid oxidase 1 OS=Homo sapiens GN=HAO1 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.759e-41
Identity = 81/134 (60.45%), Postives = 107/134 (79.85%), Query Frame = -3
Query:  242 WLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITR 643
            WL+ +TSLPI+ KG+L  +DA  A+++G  GI+VSNHGARQLD VPAT+  L E+V+A +G+V VFLDGGVR+GTDV KALALGA  VFVGRP+ + LA  GE GV+ VL++L++EF L MALSGC+++K I +
Sbjct:  224 WLRRLTSLPIVAKGILRGDDAREAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVWGLAFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDK 357          
BLAST of CB304852 vs. ExPASy Swiss-Prot
Match: HAOX2_BOVIN (Hydroxyacid oxidase 2 OS=Bos taurus GN=HAO2 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.945e-40
Identity = 81/137 (59.12%), Postives = 106/137 (77.37%), Query Frame = -3
Query:  233 WLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNPI 643
            W Q++T LPI++KG+LT EDA LA+++   GIIVSNHG RQLD VPA++ AL EVV A KG+V V+LDGG+R G DV KALALGA  VFVGRP+ + LA  GE GV++VL +L++EF  +M L+GCRS+ EI ++ I
Sbjct:  212 WFQSMTRLPIILKGILTKEDAELAVKHNVHGIIVSNHGGRQLDEVPASIDALTEVVAAVKGKVEVYLDGGIRTGNDVLKALALGAKCVFVGRPILWGLAYKGEHGVKEVLDILKNEFHTSMTLTGCRSVAEINQDLI 348          
BLAST of CB304852 vs. ExPASy Swiss-Prot
Match: HAOX2_HUMAN (Hydroxyacid oxidase 2 OS=Homo sapiens GN=HAO2 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.541e-40
Identity = 81/135 (60.00%), Postives = 104/135 (77.04%), Query Frame = -3
Query:  239 WLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRN 643
            W Q+IT LPI++KG+LT EDA LA+++   GIIVSNHG RQLD V A++ AL EVV A KG++ V+LDGGVR G DV KALALGA  +F+GRP+ + LA  GE GV++VL +L +EF  +MAL+GCRS+ EI RN
Sbjct:  210 WFQSITRLPIILKGILTKEDAELAVKHNVQGIIVSNHGGRQLDEVLASIDALTEVVAAVKGKIEVYLDGGVRTGNDVLKALALGAKCIFLGRPILWGLACKGEHGVKEVLNILTNEFHTSMALTGCRSVAEINRN 344          
BLAST of CB304852 vs. ExPASy Swiss-Prot
Match: HAOX2_MOUSE (Hydroxyacid oxidase 2 OS=Mus musculus GN=Hao2 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.056e-38
Identity = 77/132 (58.33%), Postives = 102/132 (77.27%), Query Frame = -3
Query:  245 LQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEIT 640
            LQ++T LPI++KG+LT EDA LA+++   GIIVSNHG RQLD VPA++ AL EVV A  G++ V++DGGVR G DV KALALGA  +F+GRP+ + LA  GE GV++VL +L++E    MALSGCRS+ EI+
Sbjct:  213 LQSMTRLPIILKGILTKEDAELAVKHNIRGIIVSNHGGRQLDEVPASIDALREVVAAVNGKIEVYMDGGVRTGNDVLKALALGARCIFLGRPIIWGLACKGEDGVKEVLDILKEELHTCMALSGCRSVAEIS 344          
BLAST of CB304852 vs. ExPASy Swiss-Prot
Match: HAOX_DICDI (Hydroxyacid oxidase OS=Dictyostelium discoideum GN=haox PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.013e-37
Identity = 76/142 (53.52%), Postives = 102/142 (71.83%), Query Frame = -3
Query:  218 WLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNPIVTHWD 643
            WL++IT LPILVKG++  +DA LA+QYGA GIIVSNHG RQLD  P+T+  L  + +  +GRVP+ LDGG+RRGTDV KALA GA+ V +GRP+ + L+  G+ GV KVL +L  E +L MAL+G  ++ +I  + I   WD
Sbjct:  243 WLKSITKLPILVKGIMCPKDAELALQYGADGIIVSNHGGRQLDTCPSTIEVLPYISKVVRGRVPLILDGGIRRGTDVLKALAFGANAVCIGRPIIWGLSTGGKDGVLKVLNLLNSELQLAMALTGITNISDINNSII---WD 381          
BLAST of CB304852 vs. ExPASy Swiss-Prot
Match: HAOX2_RAT (Hydroxyacid oxidase 2 OS=Rattus norvegicus GN=Hao2 PE=1 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.305e-36
Identity = 76/132 (57.58%), Postives = 100/132 (75.76%), Query Frame = -3
Query:  245 LQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGVRKVLQMLRDEFELTMALSGCRSLKEIT 640
            LQ+IT LPI++KG+LT EDA LA+++   GI+VSNHG RQLD V A++ AL EVV A KG++ V++DGGVR GTDV KALALGA  +F+GRP+ + LA  GE GV++VL +L  E    M LSGC+S+ EI+
Sbjct:  213 LQSITRLPIILKGILTKEDAELAMKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRPILWGLACKGEDGVKEVLDILTAELHRCMTLSGCQSVAEIS 344          
The following BLAST results are available for this feature:
BLAST of CB304852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
GOX2_ARATH1.210e-6684.67Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 ... [more]
GOX_SPIOL3.520e-6683.55Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia... [more]
GOX1_ARATH6.005e-6683.33Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 ... [more]
HAOX1_MOUSE4.630e-4261.19Hydroxyacid oxidase 1 OS=Mus musculus GN=Hao1 PE=2... [more]
HAOX1_HUMAN1.759e-4160.45Hydroxyacid oxidase 1 OS=Homo sapiens GN=HAO1 PE=1... [more]
HAOX2_BOVIN1.945e-4059.12Hydroxyacid oxidase 2 OS=Bos taurus GN=HAO2 PE=2 S... [more]
HAOX2_HUMAN2.541e-4060.00Hydroxyacid oxidase 2 OS=Homo sapiens GN=HAO2 PE=2... [more]
HAOX2_MOUSE4.056e-3858.33Hydroxyacid oxidase 2 OS=Mus musculus GN=Hao2 PE=2... [more]
HAOX_DICDI2.013e-3753.52Hydroxyacid oxidase OS=Dictyostelium discoideum GN... [more]
HAOX2_RAT1.305e-3657.58Hydroxyacid oxidase 2 OS=Rattus norvegicus GN=Hao2... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_A10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_A10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304852 ID=CB304852; Name=CB304852; organism=Citrus sinensis; type=EST; length=645bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCATAAAAAGCCCCAAGCC
AAGCCGCACCTCCCTTTATTTAATTAATTCATACATCCTTGTCGTCTTAA
CAAAATGCTAATCCCTGAATCCGGGATTAGGTTATTCGAATCACAGTTGT
TTAAAAATGAAAAGTTTTAATGTTGATGTTGGAGACCATCTTACAATCTG
GCTACAGCTCCTGGAGTGTCCCAATGAGTCACAATGGGGTTGCGTGTAAT
CTCCTTGAGCGAACGGCACCCACTTAATGCCATTGTTAGCTCAAACTCAT
CACGAAGCATCTGAAGCACTTTTCTCACACCAGCCTCTCCATCAACTGCC
AGCGAGAATGGTACTGGCCTTCCAACAAATACTCCAGATGCTCCTAAAGC
CAAAGCCTTGAAGACATCGGTTCCACGACGAACCCCACCATCAAGGAAAA
CAGGAACTCGGCCTTTTGCAGCTTGAACAACCTCTTCCAAAGCCATAACA
GTTGCAGGGACATAATCTAGTTGGCGCGCTCCGTGATTGGATACAATGAT
TCCTGCAGCTCCATATTGTATTGCTAGACTTGCATCCTCAGCAGTAAGAA
CACCCTTCACGAGTATTGGCAGTGAGGTGATTGTTTGAAGCCACT
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