CB304899

Overview
NameCB304899
Unique NameCB304899
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length560
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig980 contig Csv1_Contig980:662..1221. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304899 vs. ExPASy Swiss-Prot
Match: RHM1_ARATH (Probable rhamnose biosynthetic enzyme 1 OS=Arabidopsis thaliana GN=RHM1 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.190e-58
Identity = 110/118 (93.22%), Postives = 114/118 (96.61%), Query Frame = -3
Query:  205 FITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYKKYINPEFKWVNFTLEEQAKVIVAPRSNNEMDASKLKKEFPELLSIKDSLIKYVFEPNKKT 558
            FITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNL+GIWNFTNPGVVSHNEILEMY+ YINPEFKW NFTLEEQAKVIVAPRSNNEMDASKLKKEFPELLSIK+SLIKY + PNKKT
Sbjct:  552 FITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLKGIWNFTNPGVVSHNEILEMYRDYINPEFKWANFTLEEQAKVIVAPRSNNEMDASKLKKEFPELLSIKESLIKYAYGPNKKT 669          
BLAST of CB304899 vs. ExPASy Swiss-Prot
Match: RHM3_ARATH (Probable rhamnose biosynthetic enzyme 3 OS=Arabidopsis thaliana GN=RHM3 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.316e-57
Identity = 107/118 (90.68%), Postives = 112/118 (94.92%), Query Frame = -3
Query:  205 FITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYKKYINPEFKWVNFTLEEQAKVIVAPRSNNEMDASKLKKEFPELLSIKDSLIKYVFEPNKKT 558
            FITKISRYNKVVNIPNSMT+LDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYK YI P+FKW NF LEEQAKVIVAPRSNNEMD +KL KEFPE+LSIKDSLIKYVFEPNK+T
Sbjct:  547 FITKISRYNKVVNIPNSMTILDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYKSYIEPDFKWSNFNLEEQAKVIVAPRSNNEMDGAKLSKEFPEMLSIKDSLIKYVFEPNKRT 664          
BLAST of CB304899 vs. ExPASy Swiss-Prot
Match: RHM2_ARATH (Probable rhamnose biosynthetic enzyme 2 OS=Arabidopsis thaliana GN=RHM2 PE=1 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.231e-55
Identity = 105/118 (88.98%), Postives = 111/118 (94.07%), Query Frame = -3
Query:  205 FITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYKKYINPEFKWVNFTLEEQAKVIVAPRSNNEMDASKLKKEFPELLSIKDSLIKYVFEPNKKT 558
            FITKISRYNKVV+IPNSMTVLDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYK YI P FKW NFT+EEQAKVIVA RSNNEMD SKL KEFPE+LSIK+SL+KYVFEPNK+T
Sbjct:  550 FITKISRYNKVVDIPNSMTVLDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYKNYIEPGFKWSNFTVEEQAKVIVAARSNNEMDGSKLSKEFPEMLSIKESLLKYVFEPNKRT 667          
BLAST of CB304899 vs. ExPASy Swiss-Prot
Match: YL780_MIMIV (Uncharacterized protein L780 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L780 PE=4 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.374e-22
Identity = 49/117 (41.88%), Postives = 77/117 (65.81%), Query Frame = -3
Query:  220 FITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYKKYINPEFKWVNFTLEEQAKVIVAPRSNNEMDASKLKKEFPE----LLSIKDSLIKYVFE 558
            FITKI  Y+++ +IPNSMT+LD+++P+ I+MA+    G +NFTNPG+VSHNEIL + +    P   W N + E+Q  ++ A RSNN ++  KL+  +P+    L  I++ + K  F+
Sbjct:  172 FITKILSYSRICSIPNSMTILDQMIPVMIDMARNKTTGTFNFTNPGLVSHNEILSLIRDIHKPNLTWENMSREQQLAILKADRSNNLLNTDKLQSLYPDVPDILTGIREVVSKMKFQ 288          
The following BLAST results are available for this feature:
BLAST of CB304899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RHM1_ARATH1.190e-5893.22Probable rhamnose biosynthetic enzyme 1 OS=Arabido... [more]
RHM3_ARATH1.316e-5790.68Probable rhamnose biosynthetic enzyme 3 OS=Arabido... [more]
RHM2_ARATH1.231e-5588.98Probable rhamnose biosynthetic enzyme 2 OS=Arabido... [more]
YL780_MIMIV1.374e-2241.88Uncharacterized protein L780 OS=Acanthamoeba polyp... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_G05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_G05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304899 ID=CB304899; Name=CB304899; organism=Citrus sinensis; type=EST; length=560bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACAAGAAGCATGGCTAATTA
TCTCTAGTGCAGTAAATATAAAGTGATTACACCAAAAAGAAATGAGGAGT
AAAGCTGATTAACAGTACAATGGTACTCCAAACCTATTATGTAATGCAGA
ATGTGTTGGTCAAACAAGAGGCCCCTACAACTGAAAGCTGCTTAATGTAC
CCTAGGTTTTCTTGTTGGGCTCAAAGACATACTTGATCAGTGAATCCTTG
ATGGATAGCAACTCAGGGAACTCCTTCTTCAACTTAGAAGCATCCATCTC
GTTGTTGCTTCTTGGGGCGACTATCACCTTTGCTTGCTCTTCTAATGTGA
AGTTCACCCACTTAAATTCTGGGTTAATGTACTTCTTGTACATCTCAAGA
ATTTCATTGTGGCTCACAACCCCAGGGTTTGTGAAGTTCCAAATACCCCT
CAAGTTACGCTTTGCCATCTCAATTGAAATGGGGAGAAGTTCATCCAAAA
CAGTCATACTGTTTGGAATGTTGACCACCTTGTTATAACGAGAAATCTTG
GTAATGAAGT
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