CB304908

Overview
NameCB304908
Unique NameCB304908
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length615
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304908 vs. ExPASy Swiss-Prot
Match: SODF_SOYBN (Superoxide dismutase [Fe], chloroplastic OS=Glycine max GN=SODB PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.352e-15
Identity = 35/70 (50.00%), Postives = 53/70 (75.71%), Query Frame = -3
Query:  404 RLAVVKTSNAINPLVWNDI-PIISLDMWEHAYYLDYKNDKGTYTNVFMNHLVSWNAAMSRMACAEAFVNS 610
            +L V+K+ NA+NPLVW    P++++D+WEHAYYLD++N +  Y +VFM+ LVSW+A  SR+  A+A + S
Sbjct:  178 KLVVLKSPNAVNPLVWGGYYPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWDAVSSRLEQAKALITS 247          
BLAST of CB304908 vs. ExPASy Swiss-Prot
Match: SODF_ARATH (Superoxide dismutase [Fe], chloroplastic OS=Arabidopsis thaliana GN=SODB PE=1 SV=4)

HSP 1 Score: 79.337 bits (194), Expect = 1.654e-14
Identity = 33/65 (50.77%), Postives = 47/65 (72.31%), Query Frame = -3
Query:  416 RLAVVKTSNAINPLVWNDIPIISLDMWEHAYYLDYKNDKGTYTNVFMNHLVSWNAAMSRMACAEA 610
            +L VVKT NA+NPLV    P++++D+WEHAYYLD++N +  Y   FM +LVSW A  +R+  A+A
Sbjct:  145 KLKVVKTPNAVNPLVLGSFPLLTIDVWEHAYYLDFQNRRPDYIKTFMTNLVSWEAVSARLEAAKA 209          
BLAST of CB304908 vs. ExPASy Swiss-Prot
Match: SODF_NICPL (Superoxide dismutase [Fe], chloroplastic (Fragment) OS=Nicotiana plumbaginifolia GN=SODB PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.684e-14
Identity = 34/66 (51.52%), Postives = 48/66 (72.73%), Query Frame = -3
Query:  416 RRLAVVKTSNAINPLVWNDIPIISLDMWEHAYYLDYKNDKGTYTNVFMNHLVSWNAAMSRMACAEA 613
            ++LA+VKT NA NPLV    P++++D+WEHAYYLD++N +  Y ++FM  LVSW A  SR+  A A
Sbjct:  137 KKLALVKTPNAENPLVLGYTPLLTIDVWEHAYYLDFQNRRPDYISIFMEKLVSWEAVSSRLKAATA 202          
The following BLAST results are available for this feature:
BLAST of CB304908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SODF_SOYBN4.352e-1550.00Superoxide dismutase [Fe], chloroplastic OS=Glycin... [more]
SODF_ARATH1.654e-1450.77Superoxide dismutase [Fe], chloroplastic OS=Arabid... [more]
SODF_NICPL3.684e-1451.52Superoxide dismutase [Fe], chloroplastic (Fragment... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_H06 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_H06 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304908 ID=CB304908; Name=CB304908; organism=Citrus sinensis; type=EST; length=615bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCATGTTTAAATAACTAAAAA
GTTTATTTTTATTCTGCGTTTGTAAATTCAATTTGATCATGTAACTAAAT
AAAATAATATATGTTGTATTTAAATCAAATTAAATTGCACCACATTTTTT
ACGGTTTGGAACTGTTACATGCCTAGTACTAATCTTTAAATTTCTAATCT
ACTCAATTGAACTGAACAACAAACATATTACATAATACAAAATTTTTCGG
CATTACAACATCTTCTCAGTCGTAGCCTATGTGTTTCTACATCCAAAGGG
TTTCTTGAGACCTTATGCAGTTGCTTTAAAGGCCTTGCAACATCCTTTGC
CTGCAGCTTCTCGATATAAAAACATTTCAAGCAATCGGAATTTTGGGTTC
ACCTGAATTCACGAAGGCCTCTGCACAAGCCATTCGTGACATTGCAGCAT
TCCAAGACACAAGGTGGTTCATAAACACGTTTGTATATGTCCCTTTGTCA
TTCTTGTAATCCAGATAATAAGCATGCTCCCACATATCCAAACTGATGAT
GGGGATGTCATTCCACACAAGTGGATTTATGGCATTTGATGTTTTAACCA
CAGCAAGCCTTCTCT
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