CB304915

Overview
NameCB304915
Unique NameCB304915
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304915_ssr284 microsatellite CB304915_ssr284:284..293. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2077 contig Csv1_Contig2077:158..858. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304915 vs. ExPASy Swiss-Prot
Match: HSP21_SOLPE (17.3 kDa class II heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.782e-52
Identity = 104/133 (78.20%), Postives = 114/133 (85.71%), Query Frame = -2
Query:  302 SADNKSSNAPTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLPISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXKTIEVKIA 700
            +A   S NAP++ YVRDAKAMAATPADVKEYPNSYVF+VDMPGLKSGDIKVQVE+DNVL ISGERKREEEK+GAK++RMERRVGKFMRKF LPENAN +AISAVCQDGVLTVTV           KTIEVK+A
Sbjct:   23 AAGEDSVNAPSKIYVRDAKAMAATPADVKEYPNSYVFVVDMPGLKSGDIKVQVEEDNVLLISGERKREEEKEGAKFIRMERRVGKFMRKFSLPENANTDAISAVCQDGVLTVTVQKLPPPEPKKPKTIEVKVA 155          
BLAST of CB304915 vs. ExPASy Swiss-Prot
Match: HSP21_SOYBN (17.9 kDa class II heat shock protein OS=Glycine max GN=HSP17.9-D PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.197e-51
Identity = 101/133 (75.94%), Postives = 114/133 (85.71%), Query Frame = -2
Query:  302 SADNKSSNAPTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLPISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXKTIEVKIA 700
            + DNK+ NAPT +YVRDAKAMAATPADVKEYPNSYVF +DMPGLKSGDIKVQVEDDN+L I GERKR+EEK+GAKY+RMERRVGK MRKFVLPENAN +AISAVCQDGVL+VTV           +TI+VK+A
Sbjct:   27 AGDNKTHNAPTWSYVRDAKAMAATPADVKEYPNSYVFEIDMPGLKSGDIKVQVEDDNLLLICGERKRDEEKEGAKYLRMERRVGKLMRKFVLPENANTDAISAVCQDGVLSVTVQKLPPPEPKKPRTIQVKVA 159          
BLAST of CB304915 vs. ExPASy Swiss-Prot
Match: HSP21_PEA (17.1 kDa class II heat shock protein OS=Pisum sativum GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.090e-50
Identity = 100/129 (77.52%), Postives = 114/129 (88.37%), Query Frame = -2
Query:  302 KSSNAPTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLPISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXKTIEVKIA 688
            K+ NAPTRTYVRDAKAMAATPADVKE+PNSYVF+VDMPG+KSGDIKVQVED+NVL ISGERKREEEK+G KY++MERR+GK MRKFVLPENAN+EAISA+ QDGVLTVTV+          KTI+VK+A
Sbjct:   24 KNLNAPTRTYVRDAKAMAATPADVKEHPNSYVFMVDMPGVKSGDIKVQVEDENVLLISGERKREEEKEGVKYLKMERRIGKLMRKFVLPENANIEAISAISQDGVLTVTVNKLPPPEPKKPKTIQVKVA 152          
BLAST of CB304915 vs. ExPASy Swiss-Prot
Match: HSP21_IPONI (17.2 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-1 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.575e-49
Identity = 104/135 (77.04%), Postives = 115/135 (85.19%), Query Frame = -2
Query:  305 SADNKSSN--APTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLPISGERKRE-EEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXKTIEVKI 700
            + D+KSSN  AP+RT++ DAKAMAATPADVKEYPNSYVFI+DMPGLKSGDIKVQV+ DNVL ISGERKRE EEK+GAKYVRMERRVGK MRKFVLPENAN E I+AVCQDGVLTVTV+          +TIEVKI
Sbjct:   20 AGDDKSSNSSAPSRTFMLDAKAMAATPADVKEYPNSYVFIIDMPGLKSGDIKVQVDGDNVLSISGERKREAEEKEGAKYVRMERRVGKLMRKFVLPENANKEKITAVCQDGVLTVTVENVPPPEPKKPRTIEVKI 154          
BLAST of CB304915 vs. ExPASy Swiss-Prot
Match: HSP21_HELAN (17.9 kDa class II heat shock protein OS=Helianthus annuus GN=HSP17.9 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.288e-47
Identity = 96/131 (73.28%), Postives = 111/131 (84.73%), Query Frame = -2
Query:  302 NKSSNA-PTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLPISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXKTIEVKIA 691
            NKS+N+ P+R YVRDA+AMAATPADVKE PNSYVFIVDMPGLKSGDIKVQVE DNVL ISG+R REEEK+G KYVRMERR+GKFM+KF LPE+AN + ISA+CQDGVLTVTV+          KTI+V++A
Sbjct:   30 NKSNNSGPSRAYVRDARAMAATPADVKECPNSYVFIVDMPGLKSGDIKVQVERDNVLVISGKRNREEEKEGVKYVRMERRMGKFMKKFALPEDANTDKISAICQDGVLTVTVEKLPPPEPKKPKTIQVQVA 160          
BLAST of CB304915 vs. ExPASy Swiss-Prot
Match: HSP22_IPONI (18.8 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-2 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.242e-45
Identity = 93/126 (73.81%), Postives = 105/126 (83.33%), Query Frame = -2
Query:  302 PTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLPISGER--KREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXKTIEVKIA 673
            P R YVRDAKAMAATPADVKEYPNSYVFI DMPG+K+ +IKVQVEDDNVL +SGER  + ++EKDG KY+RMERRVGKFMRKFVLPENANVEAI+AV QDGVL VTV+          KT+EVK+A
Sbjct:   42 PIRAYVRDAKAMAATPADVKEYPNSYVFIADMPGVKAAEIKVQVEDDNVLVVSGERTEREKDEKDGVKYLRMERRVGKFMRKFVLPENANVEAINAVYQDGVLQVTVEKLPPPEPKKPKTVEVKVA 167          
BLAST of CB304915 vs. ExPASy Swiss-Prot
Match: HSP22_MAIZE (17.8 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.795e-44
Identity = 89/133 (66.92%), Postives = 109/133 (81.95%), Query Frame = -2
Query:  302 DNK--SSNAPTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLPISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXKTIEVKIA 694
            DNK  S  + TRTYVRDA+AMAATPADVKE P +Y F+VDMPGL +GDI+VQVED+ VL +SGER+REE +D AKY+RMERR+GKFMRKFVLP+NA+V+ ++AVC+DGVLTVTV+          KTIEVK+A
Sbjct:   32 DNKTGSGGSATRTYVRDARAMAATPADVKELPGAYAFVVDMPGLGTGDIRVQVEDERVLVVSGERRREEREDDAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVLTVTVEKLPPPEPKKPKTIEVKVA 164          
BLAST of CB304915 vs. ExPASy Swiss-Prot
Match: HSP21_MAIZE (17.5 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.427e-42
Identity = 88/131 (67.18%), Postives = 104/131 (79.39%), Query Frame = -2
Query:  302 DNKSSNAPTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLPISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXKTIEVKIA 694
            D      PTRTYV DA+AMA TPADVKE P +Y F+VDMPGL +GDIKVQVED+ VL ISGER+REE +D AKY+RMERR+GKFMRKFVLP+NA+++ ISAVC+DGVLTVTV+          KTIEVK+A
Sbjct:   32 DKAGGGGPTRTYVADARAMAVTPADVKELPGAYAFVVDMPGLGTGDIKVQVEDERVLVISGERRREERED-AKYLRMERRMGKFMRKFVLPDNADMDKISAVCRDGVLTVTVEKLPPPEPKKPKTIEVKVA 161          
BLAST of CB304915 vs. ExPASy Swiss-Prot
Match: HSP23_MAIZE (17.0 kDa class II heat shock protein OS=Zea mays GN=HSP18 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.252e-42
Identity = 85/130 (65.38%), Postives = 106/130 (81.54%), Query Frame = -2
Query:  302 NKSSNAPTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLPISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXKTIEVKIA 691
            +K+    TRTYVRDA+AMAATPADVKE   +Y F+VDMPGL +GDI+VQVED+ VL ISGER+REE +D AKY+RMERR+GKFMRKFVLP+NA+V+ ++AVC+DGVLTVTV+          KTIE+K+A
Sbjct:   26 DKAGGGATRTYVRDARAMAATPADVKELAGAYAFVVDMPGLSTGDIRVQVEDERVLVISGERRREERED-AKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVLTVTVEKLPPPEPKKPKTIEIKVA 154          
BLAST of CB304915 vs. ExPASy Swiss-Prot
Match: HSP18_ORYSJ (18.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.0 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.252e-42
Identity = 86/132 (65.15%), Postives = 106/132 (80.30%), Query Frame = -2
Query:  302 SSNAPTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLPISGERKR----EEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXKTIEVKIA 685
            ++  PTR YVRDA+AMAATPADVK+ P +Y F+VDMPGLKS DIKVQVE++ +L ISGER+R    EE+++  KY+RMERR+GKFMRKFVLP+NA+V+ ISAVCQDGVLTVTV+          KTIEVK+A
Sbjct:   35 ATGGPTRAYVRDARAMAATPADVKDLPGAYAFVVDMPGLKSSDIKVQVEEERLLVISGERRRGGGEEEKEESCKYLRMERRMGKFMRKFVLPDNADVDKISAVCQDGVLTVTVEKLPPPEPKKPKTIEVKVA 166          
The following BLAST results are available for this feature:
BLAST of CB304915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HSP21_SOLPE5.782e-5278.2017.3 kDa class II heat shock protein OS=Solanum pe... [more]
HSP21_SOYBN2.197e-5175.9417.9 kDa class II heat shock protein OS=Glycine ma... [more]
HSP21_PEA1.090e-5077.5217.1 kDa class II heat shock protein OS=Pisum sati... [more]
HSP21_IPONI1.575e-4977.0417.2 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP21_HELAN4.288e-4773.2817.9 kDa class II heat shock protein OS=Helianthus... [more]
HSP22_IPONI5.242e-4573.8118.8 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP22_MAIZE5.795e-4466.9217.8 kDa class II heat shock protein OS=Zea mays P... [more]
HSP21_MAIZE1.427e-4267.1817.5 kDa class II heat shock protein OS=Zea mays P... [more]
HSP23_MAIZE9.252e-4265.3817.0 kDa class II heat shock protein OS=Zea mays G... [more]
HSP18_ORYSJ9.252e-4265.1518.0 kDa class II heat shock protein OS=Oryza sati... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_A02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_A02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304915 ID=CB304915; Name=CB304915; organism=Citrus sinensis; type=EST; length=701bp
TTTTTTTTTTTTTTTTTTTTTTTTTTAGATAAAAGCTGGATTTTTCATTA
ATTATAACAACTAGATGTCTACCAGTAGACGGCCGTCAGCTTCCCCTCCG
GAATGCCAAAGACCGAACCACAAACCAGTGAACAGAGAGAATTTTGGACA
AAAAAGGGAAGAAAGAGAAAAAAAGAAAAAGGAAGAGGAGATTACAGAGG
CATAGTACCGTCAAACCCACAAGCAAAATTATTCATAACAACCGGCAAAT
AGAAAAGACATCAGCACCCACAATCCAGCATATTCTCTCTCTCAAAGTTC
AAGCAATCTTAACCTCAATGGTCTTGGGCTTCTTGGGCTCCGGCGGTGGC
AGCTTATCGACAGTCACAGTCAACACTCCGTCCTGACACACCGCCGAAAT
GGCTTCAACGTTAGCATTCTCAGGCAGCACAAATTTCCTCATAAACTTGC
CAACCCTCCTCTCCATTCTCACATACTTGGCCCCATCTTTCTCCTCCTCC
CGCTTCCTCTCACCGCTTATGGGCAGCACATTGTCGTCCTCCACTTGGAC
CTTGATGTCCCCCGACTTCAGTCCGGGCATATCGACGATGAACACGTACG
AGTTCGGATACTCCTTCACGTCCGCAGGCGTCGCCGCCATTGCCTTGGCG
TCTCTCACGTACGTGCGCGTCGGCGCGTTGGATGACTTGTTGTCAGCGGA
G
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