CB304926

Overview
NameCB304926
Unique NameCB304926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length643
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304926 vs. ExPASy Swiss-Prot
Match: EXOS1_MOUSE (3'-5' exoribonuclease CSL4 homolog OS=Mus musculus GN=Exosc1 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.065e-30
Identity = 67/125 (53.60%), Postives = 92/125 (73.60%), Query Frame = -2
Query:  205 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVLSLGDARA-YFLSTAKNDLGVVSAESTAGGTMVPISWTEMQCPLTGQTEQRKVAKV 576
            +P+ G+VV  +V+ + +R A   I+ VG+  ++  F G IR++D+RATE DKV+++ SFRPGDIV A V+SLGDA++ Y L+TA+N+LGVV A S +G  MVPISW EMQCP T   E RKVA+V
Sbjct:   64 LPDVGAVVTCKVSSINSRFAKVHILYVGSTPLKNAFRGTIRKEDIRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESGVQMVPISWCEMQCPKTHTKEFRKVARV 188          
BLAST of CB304926 vs. ExPASy Swiss-Prot
Match: EXOS1_HUMAN (3'-5' exoribonuclease CSL4 homolog OS=Homo sapiens GN=EXOSC1 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.065e-30
Identity = 67/125 (53.60%), Postives = 92/125 (73.60%), Query Frame = -2
Query:  205 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVLSLGDARA-YFLSTAKNDLGVVSAESTAGGTMVPISWTEMQCPLTGQTEQRKVAKV 576
            +P+ G++V  +V+ + +R A   I+ VG+  ++  F G IR++DVRATE DKV+++ SFRPGDIV A V+SLGDA++ Y L+TA+N+LGVV A S +G  MVPISW EMQCP T   E RKVA+V
Sbjct:   64 LPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESGIQMVPISWCEMQCPKTHTKEFRKVARV 188          
BLAST of CB304926 vs. ExPASy Swiss-Prot
Match: CSL4_SCHPO (Exosome complex component csl4 OS=Schizosaccharomyces pombe GN=csl4 PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.353e-25
Identity = 61/124 (49.19%), Postives = 86/124 (69.35%), Query Frame = -2
Query:  208 VPEPGSVVIARVTKVMTRMASADIMCVGAKSVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVLSLGDARAYFLSTAKNDLGVVSAEST-AGGTMVPISWTEMQCPLTGQTEQRKVAK 576
            +P  GS+V+ARV+++  R A+ +I  V     +++F G+I  QD+RATE +KV +  SFRPGDIVRA V+SLGD  +YFL+TA+NDLGV+ A+S+  G  M P+ +  MQ   +G TE RK AK
Sbjct:   54 LPNVGSIVLARVSRINARQATVNISVVDDVCTKDEFQGVIHVQDIRATEKNKVKVQNSFRPGDIVRALVISLGDGSSYFLTTARNDLGVIFAQSSETGEQMFPVDYQHMQTK-SGYTEMRKCAK 176          
BLAST of CB304926 vs. ExPASy Swiss-Prot
Match: CSL4_YEAST (Exosome complex component CSL4 OS=Saccharomyces cerevisiae GN=CSL4 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.120e-22
Identity = 66/179 (36.87%), Postives = 91/179 (50.84%), Query Frame = -2
Query:  208 PDSPDQRATVEVTGHKAHGPVPEPGSVVIARVTKVMTRMASADIMCVGAK----------------------------------SVREKFSGIIRQQDVRATEIDKVDMHLSFRPGDIVRASVLSLGDARAYFLSTAKNDLGVVSAEST--AGGTMVPISWTEMQCPLTGQTEQRKVAK 636
            P +   R T +   +     +P+ G +V+ RVT++  + A+ +I+ V  K                                   + E F GIIR QDVR+T+ D+V +   F+PGDIVRA VLSLGD   Y+L+TA+NDLGVV A +   AGG M    W  M  P+TG TE+RK AK
Sbjct:  112 PGTEKGRKTNKYANNDFANNLPKEGDIVLTRVTRLSLQRANVEILAVEDKPSPIDSGIGSNGSGIVAAGGGSGAATFSVSQASSDLGETFRGIIRSQDVRSTDRDRVKVIECFKPGDIVRAQVLSLGDGTNYYLTTARNDLGVVFARAANGAGGLMYATDWQMMTSPVTGATEKRKCAK 290          
The following BLAST results are available for this feature:
BLAST of CB304926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
EXOS1_MOUSE4.065e-3053.603'-5' exoribonuclease CSL4 homolog OS=Mus musculus... [more]
EXOS1_HUMAN4.065e-3053.603'-5' exoribonuclease CSL4 homolog OS=Homo sapiens... [more]
CSL4_SCHPO1.353e-2549.19Exosome complex component csl4 OS=Schizosaccharomy... [more]
CSL4_YEAST3.120e-2236.87Exosome complex component CSL4 OS=Saccharomyces ce... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_C03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_C03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304926 ID=CB304926; Name=CB304926; organism=Citrus sinensis; type=EST; length=643bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGCAAAAAATAAAATTCTTCT
TCTCATACCTTGGCTTTTACAGATACGAATTCAACACAAGAATTATAGTT
CTCTGGCTAACAATAAATTTTTAAAGTACGCTTTCTCCAACAAATCTATG
AAATCACATTTAAGATTCTTCTACCGCAAGATCAATTTCACTGGGTCAAG
TCCCAACCTTGGCAACCTTTCTTTGCTCTGTTTGGCCGGTTAATGGGCAT
TGCATCTCGGTCCAACTTATTGGAACCATGGTTCCACCAGCTGTACTCTC
TGCTGACACAACACCCAGATCATTTTTTGCAGTGGAAAGAAAATATGCCC
GTGCATCTCCAAGGGACAGCACTGAAGCTCTAACAATGTCCCCAGGCCGA
AATGACAAGTGCATATCCACTTTGTCAATCTCAGTTGCTCTAACATCTTG
CTGCCTGATTATGCCCGAAAATTTCTCTCTCACAGACTTGGCACCAACAC
ACATAATATCAGCTGAAGCCATCCTAGTCATCACTTTCGTAACTCGGGCA
ATGACAACAGAACCAGGCTCTGGAACAGGGCCATGGGCCTTGTGACCAGT
TACTTCCACAGTTGCTCTCTGGTCGGGGGAGTCGGGAGGAGGG
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