CB304933

Overview
NameCB304933
Unique NameCB304933
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length478
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1862 contig Csv1_Contig1862:280..757. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304933 vs. ExPASy Swiss-Prot
Match: CYBP_RAT (Calcyclin-binding protein OS=Rattus norvegicus GN=Cacybp PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.789e-12
Identity = 48/142 (33.80%), Postives = 71/142 (50.00%), Query Frame = -1
Query:   35 EGPAPVPTPAKVSFTPALNYITLGSFSWDQDNEKVKIYISLEGVVQ---DKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPPRVVIML-FKASKGNWLDLQYKE----DKLKPNLDKERDPMAGIMDL 436
            E PA V  P    +T     + + ++ WDQ ++ VKIYI+L GV Q   + ++  F + SFD+   ++ GKNY      L + I  E S   VK   V+I+   KA    W  L   E    +K KP+ D E DP  G+M++
Sbjct:   59 EKPAAVVAPLTTGYT-----VKISNYGWDQSDKFVKIYITLTGVHQVPAENVQVHFTERSFDLLVKNLNGKNYSMIVNNLLKPISVESSSKKVKTDTVIILCRKKAENTRWDYLTQVEKECKEKEKPSYDTEADPSEGLMNV 195          
BLAST of CB304933 vs. ExPASy Swiss-Prot
Match: CYBP_MOUSE (Calcyclin-binding protein OS=Mus musculus GN=Cacybp PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.789e-12
Identity = 48/142 (33.80%), Postives = 71/142 (50.00%), Query Frame = -1
Query:   35 EGPAPVPTPAKVSFTPALNYITLGSFSWDQDNEKVKIYISLEGVVQ---DKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPPRVVIML-FKASKGNWLDLQYKE----DKLKPNLDKERDPMAGIMDL 436
            E PA V  P    +T     + + ++ WDQ ++ VKIYI+L GV Q   + ++  F + SFD+   ++ GKNY      L + I  E S   VK   V+I+   KA    W  L   E    +K KP+ D E DP  G+M++
Sbjct:   59 EKPAAVVAPLTTGYT-----VKISNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNLNGKNYSMIVNNLLKPISVESSSKKVKTDTVIILCRKKAENTRWDYLTQVEKECKEKEKPSYDTEADPSEGLMNV 195          
BLAST of CB304933 vs. ExPASy Swiss-Prot
Match: CYBP_BOVIN (Calcyclin-binding protein OS=Bos taurus GN=CACYBP PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 9.874e-12
Identity = 48/147 (32.65%), Postives = 75/147 (51.02%), Query Frame = -1
Query:   35 KLSKEEGPAPVPTPAKVSFTPALNYITLGSFSWDQDNEKVKIYISLEGVVQ---DKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPPRVVIML-FKASKGNWLDLQYKE----DKLKPNLDKERDPMAGIMDL 451
            +L++ E PA V  P    +T     + + ++ WDQ ++ VKIYI+L GV Q   + ++  F + SFD+   ++ GK+Y      L + I  E S   VK   V+I+   KA    W  L   E    +K KP+ D E DP  G+M++
Sbjct:   55 ELTENEKPAAVVAPITTGYT-----VKISNYGWDQSDKFVKIYITLPGVHQVPAESVQVNFTERSFDLLVKNLNGKSYSMIVNNLLKPISVEGSSKKVKTDTVLILCRKKAENTRWDYLTQVEKECKEKEKPSYDTETDPSEGLMNV 196          
BLAST of CB304933 vs. ExPASy Swiss-Prot
Match: CYBP_PONAB (Calcyclin-binding protein OS=Pongo abelii GN=CACYBP PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.752e-11
Identity = 45/147 (30.61%), Postives = 74/147 (50.34%), Query Frame = -1
Query:   35 KLSKEEGPAPVPTPAKVSFTPALNYITLGSFSWDQDNEKVKIYISLEGVVQ---DKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPPRVVIMLFKASKGNWLDL-----QYKEDKLKPNLDKERDPMAGIMDL 451
            +L   E PA V  P    +T     + + ++ WDQ ++ VKIYI+L GV Q   + ++  F + SFD+   ++ GK+Y      L + I  E S   VK   V+I+  K  +    D      + +++K KP+ D E DP  G+M++
Sbjct:   53 ELLDNEKPAAVVAPITTGYT-----VKISNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNLNGKSYSMIVNNLLKPISVEGSSKKVKTDTVLILCRKKVENTRWDYLTQVEKERKEKEKPSYDAETDPSEGLMNV 194          
BLAST of CB304933 vs. ExPASy Swiss-Prot
Match: CYBP_MACFA (Calcyclin-binding protein OS=Macaca fascicularis GN=CACYBP PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.752e-11
Identity = 47/147 (31.97%), Postives = 76/147 (51.70%), Query Frame = -1
Query:   35 KLSKEEGPAPVPTPAKVSFTPALNYITLGSFSWDQDNEKVKIYISLEGVVQ---DKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPPRVVIMLFKA---SKGNWLDLQYKE--DKLKPNLDKERDPMAGIMDL 451
            +L   E PA V  P    +T     + + ++ WDQ ++ VKIYI+L GV Q   + ++  F + SFD+   ++ GK+Y      L + I  E S   VK   V+I+  K    ++ ++L    KE  +K KP+ D E DP  G+M++
Sbjct:   53 ELLDNEKPAAVVAPITTGYT-----VKISNYGWDQSDKFVKIYITLSGVHQVPTENVQVHFTERSFDLLVKNLNGKSYSMIVNNLLKPISVEGSSKKVKTDTVLILCRKKVENTRWDYLTQVEKECKEKEKPSYDTETDPSEGLMNV 194          
BLAST of CB304933 vs. ExPASy Swiss-Prot
Match: CYBP_HUMAN (Calcyclin-binding protein OS=Homo sapiens GN=CACYBP PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 4.900e-11
Identity = 47/147 (31.97%), Postives = 76/147 (51.70%), Query Frame = -1
Query:   35 KLSKEEGPAPVPTPAKVSFTPALNYITLGSFSWDQDNEKVKIYISLEGVVQ---DKMEAEFKQWSFDVKFHDVQGKNYRFTSPRLNQEIVPEKSKVLVKPPRVVIMLFKA---SKGNWLDLQYKE--DKLKPNLDKERDPMAGIMDL 451
            +L   E PA V  P    +T     + + ++ WDQ ++ VKIYI+L GV Q   + ++  F + SFD+   ++ GK+Y      L + I  E S   VK   V+I+  K    ++ ++L    KE  +K KP+ D E DP  G+M++
Sbjct:   53 ELLDNEKPAAVVAPITTGYT-----VKISNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNLNGKSYSMIVNNLLKPISVEGSSKKVKTDTVLILCRKKVENTRWDYLTQVEKECKEKEKPSYDTETDPSEGLMNV 194          
The following BLAST results are available for this feature:
BLAST of CB304933 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
CYBP_RAT5.789e-1233.80Calcyclin-binding protein OS=Rattus norvegicus GN=... [more]
CYBP_MOUSE5.789e-1233.80Calcyclin-binding protein OS=Mus musculus GN=Cacyb... [more]
CYBP_BOVIN9.874e-1232.65Calcyclin-binding protein OS=Bos taurus GN=CACYBP ... [more]
CYBP_PONAB3.752e-1130.61Calcyclin-binding protein OS=Pongo abelii GN=CACYB... [more]
CYBP_MACFA3.752e-1131.97Calcyclin-binding protein OS=Macaca fascicularis G... [more]
CYBP_HUMAN4.900e-1131.97Calcyclin-binding protein OS=Homo sapiens GN=CACYB... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_D02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_D02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304933 ID=CB304933; Name=CB304933; organism=Citrus sinensis; type=EST; length=478bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCACGTCAAATCCATAATTCCA
GCCATAGGATCTCGTTCTTTATCCAGATTTGGCTTCAGCTTATCCTCTTT
GTACTGTAAGTCTAACCAATTTCCCTTTGAAGCTTTAAAGAGCATGATGA
CAACCCTTGGGGGTTTAACCAGCACCTTGCTTTTCTCAGGAACAATCTCC
TGGTTCAACCTTGGGCTAGTAAACCGGTAATTCTTCCCTTGGACATCATG
GAATTTGACATCAAAGGACCACTGCTTGAACTCTGCTTCCATTTTATCCT
GGACTACTCCCTCTAAAGAAATATATATCTTGACTTTTTCATTATCCTGA
TCCCAGCTGAATGATCCAAGCGTAATATAGTTGAGTGCTGGAGTAAAAGA
GACCTTAGCTGGTGTTGGAACTGGAGCTGGACCTTCCTCTTTTGACAACT
TCTCCAAGGTATGAATCTCAGAGTTAAT
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