CB304940

Overview
NameCB304940
Unique NameCB304940
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length565
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10376 contig Csv1_Contig10376:225..789. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB304940 vs. ExPASy Swiss-Prot
Match: RK29_ARATH (50S ribosomal protein L29, chloroplastic OS=Arabidopsis thaliana GN=RPL29 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.740e-34
Identity = 74/96 (77.08%), Postives = 82/96 (85.42%), Query Frame = -1 
Query:  278 VVMMAKREEEMKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFXXXXXXXXXMLTVKRERELEEGINKRLSRKLDRQWKKSIVVRPPP 565
            VVMM+KRE E+KEIR+KTTE++ EEVVDLKGELFMLRLQKS RNEFKSS+F         MLTVKRERE++EGI KRLSRKLDRQWKKSIV RPPP
Sbjct:   57 VVMMSKREAELKEIRSKTTEQLQEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTVKREREIKEGIKKRLSRKLDRQWKKSIVPRPPP 152
[Close]
BLAST of CB304940 vs. ExPASy Swiss-Prot
Match: RK29_MAIZE (50S ribosomal protein L29, chloroplastic OS=Zea mays GN=RPL29 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 9.745e-32
Identity = 68/96 (70.83%), Postives = 82/96 (85.42%), Query Frame = -1 
Query:  278 VVMMAKREEEMKEIRAKTTEEINEEVVDLKGELFMLRLQKSVRNEFKSSEFXXXXXXXXXMLTVKRERELEEGINKRLSRKLDRQWKKSIVVRPPP 565
            +V MAKRE+E++EIRA TTE++ EEVVDLKGELF+LRL++S R EFK+SEF         MLTVKRERE+E+GINKRLSRKLDR+WK+SIVVRPPP
Sbjct:   58 MVAMAKREQELEEIRAMTTEQMEEEVVDLKGELFLLRLKRSARQEFKNSEFSRMRKRIARMLTVKREREIEQGINKRLSRKLDRKWKQSIVVRPPP 153
The following BLAST results are available for this feature:
BLAST of CB304940 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RK29_ARATH2.740e-3477.0850S ribosomal protein L29, chloroplastic OS=Arabid... [more]
RK29_MAIZE9.745e-3270.8350S ribosomal protein L29, chloroplastic OS=Zea ma... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_E02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_E02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304940 ID=CB304940; Name=CB304940; organism=Citrus sinensis; type=EST; length=565bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAATAGAACAAACACTTCCT
CAAGTTTGTTTCATGGGAGGAAAAGTTAAAAATATTATACAGAAATAGGA
ACATACCTACAATACAGAACATTACACACAAATTGTTTGAGCCAGCAAAT
CTGCAATGATTTCAGGAGCTTTCACTTAAAAAAATGAAAACAAATTATTT
GCAAAGTGTATATAGATGGCTCATGCAGACTTCTCAGCTTTTGCAGCCGC
CTCTTCCTCTTGCAACTTCTTCAAGGATGGAGGGGGTCTAACTACAATGC
TTTTCTTCCATTGTCGATCAAGCTTTCTGGACAATCTCTTGTTAATTCCT
TCCTCAAGCTCTCTTTCACGTTTAACAGTAAGCATGCGAGCAATCCTTCT
GCGCATACGACGAAATTCACTAGACTTGAACTCATTGCGAACTGATTTTT
GAAGACGTAGCATAAACAGCTCACCCTTCAAATCAACGACCTCTTCGTTA
ATCTCCTCTGTCGTTTTGGCTCTAATTTCCTTCATTTCTTCTTCTCTCTT
TGCCATCATAACCAC
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