CB304953

Overview
NameCB304953
Unique NameCB304953
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10926 contig Csv1_Contig10926:930..1588. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304953 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.797e-36
Identity = 72/114 (63.16%), Postives = 87/114 (76.32%), Query Frame = -2
Query:  269 AALKLVSTLVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 610
            A  KL   + LCM V+    A AITCGQV+ SLAPCIG++RSGG +P  CCNG+R++N  ARTT DRQTACNCLK  A SI  +N NNAAGLPG CGV++PYKISTST+C+ V+
Sbjct:    5 AVTKLALVVALCMAVS---VAHAITCGQVTSSLAPCIGYVRSGGAVPPACCNGIRTINGLARTTADRQTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CB304953 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.797e-36
Identity = 70/114 (61.40%), Postives = 89/114 (78.07%), Query Frame = -2
Query:  269 AALKLVSTLVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 610
            A  KL   + LCM+V+ P+ AQAITCGQVS +LAPCI ++R GG +P  CCNG+R++N  ARTTPDRQ ACNCLKQ + S+P +N NNAA LPG CGV+IPY+IS ST+C+ V+
Sbjct:    5 AMTKLALVVALCMVVSVPI-AQAITCGQVSSNLAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTNCANVK 117          
BLAST of CB304953 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.347e-36
Identity = 68/114 (59.65%), Postives = 89/114 (78.07%), Query Frame = -2
Query:  269 AALKLVSTLVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 610
            A  KL   + LCM+V+ P+ AQA+TCGQVS +LAPCI ++R GG +P  CCNG+R++N  A+TT DRQTACNCLKQ + S+P +N NNAA LPG CGV++PYKIS ST+C+ V+
Sbjct:    5 AMTKLALVVALCMVVSVPI-AQALTCGQVSSNLAPCIAYVRGGGAVPPACCNGIRNINNLAKTTADRQTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTNCATVK 117          
BLAST of CB304953 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.391e-34
Identity = 68/113 (60.18%), Postives = 84/113 (74.34%), Query Frame = -2
Query:  269 ALKLVSTLVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 607
            A+ ++   V CM+V  P + +A++CGQVS SLAPCI +L  GG +P  CC+GV+SLN+AA+TTPDRQ AC CLK A  SI  +N  NAA  PG CGVSIPYKIS STDCSKV+
Sbjct:    5 AMMVLCAGVTCMVVGAPYT-EALSCGQVSSSLAPCISYLTKGGAVPPACCSGVKSLNSAAKTTPDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSKVQ 116          
BLAST of CB304953 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.090e-33
Identity = 67/91 (73.63%), Postives = 73/91 (80.22%), Query Frame = -2
Query:  269 ITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 541
            ITCGQVS SLAPCI +LR+GG +P  CCNGVRSLN AA+TT DRQ ACNCLK A  SI  LNLN AAGLPG CGVS+PYKIS STDC  V+
Sbjct:    1 ITCGQVSSSLAPCINYLRAGGVVPANCCNGVRSLNNAAKTTADRQAACNCLKSAFNSIKGLNLNLAAGLPGKCGVSVPYKISPSTDCKSVK 91          
BLAST of CB304953 vs. ExPASy Swiss-Prot
Match: NLTP2_BRANA (Non-specific lipid-transfer protein 2 OS=Brassica napus GN=LTP2 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.172e-33
Identity = 70/117 (59.83%), Postives = 86/117 (73.50%), Query Frame = -2
Query:  269 MAALKLVSTLVL-CMLVTGPLSAQA-ITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 613
            MA L  ++ LVL CM+V GP+++ A ++CG VSG +APCIG+L   GP+P  CC GV +LN  ARTTPDRQ AC CL  AA S P+LN   AAGLP ACGV+IPYKIS ST+C+ VR
Sbjct:    1 MAGLMKLACLVLACMIVAGPITSNAALSCGTVSGYVAPCIGYLTQNGPLPRGCCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CB304953 vs. ExPASy Swiss-Prot
Match: NLTPB_BRAOT (Non-specific lipid-transfer protein B OS=Brassica oleracea var. italica GN=WAX9B PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.142e-33
Identity = 71/117 (60.68%), Postives = 85/117 (72.65%), Query Frame = -2
Query:  269 MAALKLVSTLVL-CMLVTGPLSAQA-ITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 613
            MA L  +S LVL CM+V GP++  A ++CG VSG+LA CIG+L   GP+P  CC GV +LN  ARTTPDRQ AC CL  AA S P+LN   AAGLP ACGV+IPYKIS ST+C+ VR
Sbjct:    1 MAGLVKLSCLVLACMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPLPRGCCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CB304953 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.410e-33
Identity = 64/114 (56.14%), Postives = 83/114 (72.81%), Query Frame = -2
Query:  269 AALKLVSTLVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 610
            A +KL   + LCM V+    A AITC QVS +LAPCI ++RSGG +P  CCNG++++N  A+TTPDRQ ACNCLK  A S+  +N  NA  LPG CGV++PYKISTST+C+ V+
Sbjct:    5 AVIKLALVVALCMAVS---VAHAITCSQVSANLAPCINYVRSGGAVPPACCNGIKTINGLAKTTPDRQAACNCLKNLAGSVSGVNPGNAESLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CB304953 vs. ExPASy Swiss-Prot
Match: NLTP_CICAR (Non-specific lipid-transfer protein OS=Cicer arietinum PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.410e-33
Identity = 66/115 (57.39%), Postives = 85/115 (73.91%), Query Frame = -2
Query:  269 MAALKLVSTLVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 613
            MA++K+V   ++  +V  P++  AITCG+V  +LAPC+G+L+ G      CC GVR+LN+AA TTPDRQ ACNCLK AA SI  LN NNAA LPG C V+IPYKISTST+C+ +R
Sbjct:    1 MASMKVVCVALIMCIVIAPMAESAITCGRVDTALAPCLGYLQGGPGPSAQCCGGVRNLNSAAVTTPDRQAACNCLKSAAGSISRLNANNAAALPGKCVVNIPYKISTSTNCATIR 115          
BLAST of CB304953 vs. ExPASy Swiss-Prot
Match: NLTP3_BRANA (Non-specific lipid-transfer protein 3 OS=Brassica napus GN=LTP3 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.410e-33
Identity = 68/117 (58.12%), Postives = 88/117 (75.21%), Query Frame = -2
Query:  269 MAALKLVSTLVL-CMLVTGPLSAQA-ITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 613
            MA L  +S LVL CM+V GP++  A ++CG VSG+LA CIG+L   GP+P  CC+GV SLN  ARTTPDRQ AC CL  AA ++P++N+  AAGLP ACGV+IPYKIS +T+C+ V+
Sbjct:    1 MAGLVKLSCLVLACMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPVPTACCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 117          
The following BLAST results are available for this feature:
BLAST of CB304953 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP_MALDO1.797e-3663.16Non-specific lipid-transfer protein OS=Malus domes... [more]
NLTP1_PRUDU1.797e-3661.40Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
NLTP_PRUAV2.347e-3659.65Non-specific lipid-transfer protein OS=Prunus aviu... [more]
NLTP_HELAN6.391e-3460.18Non-specific lipid-transfer protein OS=Helianthus ... [more]
LTP1_MORNI1.090e-3373.63Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP2_BRANA3.172e-3359.83Non-specific lipid-transfer protein 2 OS=Brassica ... [more]
NLTPB_BRAOT4.142e-3360.68Non-specific lipid-transfer protein B OS=Brassica ... [more]
NLTP_PYRCO5.410e-3356.14Non-specific lipid-transfer protein OS=Pyrus commu... [more]
NLTP_CICAR5.410e-3357.39Non-specific lipid-transfer protein OS=Cicer ariet... [more]
NLTP3_BRANA5.410e-3358.12Non-specific lipid-transfer protein 3 OS=Brassica ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_F08 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_F08 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304953 ID=CB304953; Name=CB304953; organism=Citrus sinensis; type=EST; length=665bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGTTGTTAAACTGAACACA
AGGCAAGATTTCATTTAATAACAGAATAGACACAAACTGACGATGACATG
AAAAGCAAAGACAATAAAACATAACATGAAACGAGGGCGCGAACGAGACT
CGCAGTACAAAGTGTAGAGAGAGACTCATAAATCGGACACAAAAATGTCC
TTATTATTATACATTTATTCTACTCCGTCAACTTAAACCTGAAAATCAAC
GGCCCAGATTCCTGTTCACCTGACCTTAGAGCAGTCAGTGGAGGTGCTGA
TCTTGTAAGGAATGCTGACTCCACAAGCTCCTGGAAGACCAGCAGCATTA
TTAAGGTTGAGGCTAGGGATTGATCTGGCGGCTTGCTTCAAGCAGTTGCA
TGCAGTTTGGCGGTCAGGTGTGGTTCTGGCGGCAGCGTTGAGAGACCTGA
CGCCGTTGCAGCATGGCATAGGTATAGGGCCGCCCGATCTCAAGAAACCG
ATGCATGGTGCCAATGAGCCACTCACCTGCCCACATGTTATGGCCTGAGC
ACTCAGGGGACCAGTCACCAACATGCACAGAACCAAAGTTGAAACAAGCT
TGAGGGCAGCCATTTGAGATTTCTCCTGAGATTTTCTTTTTCTTTTTTTT
TTTTTGCCTTGGTTA
back to top