CB304961

Overview
NameCB304961
Unique NameCB304961
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length539
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2009 contig Csv1_Contig2009:334..872. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304961 vs. ExPASy Swiss-Prot
Match: HSP21_SOLPE (17.3 kDa class II heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.998e-17
Identity = 49/76 (64.47%), Postives = 53/76 (69.74%), Query Frame = -3
Query:  310 VLLISXXXXXXXXXXGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXKTIEVKIA 537
            VLLIS          GAK++RMERRVGKFMRKF LPENAN +AISAVCQDGVLTVTV           KTIEVK+A
Sbjct:   80 VLLISGERKREEEKEGAKFIRMERRVGKFMRKFSLPENANTDAISAVCQDGVLTVTVQKLPPPEPKKPKTIEVKVA 155          
BLAST of CB304961 vs. ExPASy Swiss-Prot
Match: HSP21_IPONI (17.2 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.477e-15
Identity = 43/59 (72.88%), Postives = 46/59 (77.97%), Query Frame = -3
Query:  313 AKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXKTIEVKI 489
            AKYVRMERRVGK MRKFVLPENAN E I+AVCQDGVLTVTV+          +TIEVKI
Sbjct:   96 AKYVRMERRVGKLMRKFVLPENANKEKITAVCQDGVLTVTVENVPPPEPKKPRTIEVKI 154          
BLAST of CB304961 vs. ExPASy Swiss-Prot
Match: HSP21_SOYBN (17.9 kDa class II heat shock protein OS=Glycine max GN=HSP17.9-D PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.929e-15
Identity = 45/76 (59.21%), Postives = 52/76 (68.42%), Query Frame = -3
Query:  310 VLLISXXXXXXXXXXGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXKTIEVKIA 537
            +LLI           GAKY+RMERRVGK MRKFVLPENAN +AISAVCQDGVL+VTV           +TI+VK+A
Sbjct:   84 LLLICGERKRDEEKEGAKYLRMERRVGKLMRKFVLPENANTDAISAVCQDGVLSVTVQKLPPPEPKKPRTIQVKVA 159          
BLAST of CB304961 vs. ExPASy Swiss-Prot
Match: HSP21_PEA (17.1 kDa class II heat shock protein OS=Pisum sativum GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.929e-15
Identity = 45/76 (59.21%), Postives = 53/76 (69.74%), Query Frame = -3
Query:  310 VLLISXXXXXXXXXXGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXKTIEVKIA 537
            VLLIS          G KY++MERR+GK MRKFVLPENAN+EAISA+ QDGVLTVTV+          KTI+VK+A
Sbjct:   77 VLLISGERKREEEKEGVKYLKMERRIGKLMRKFVLPENANIEAISAISQDGVLTVTVNKLPPPEPKKPKTIQVKVA 152          
BLAST of CB304961 vs. ExPASy Swiss-Prot
Match: HSP22_MAIZE (17.8 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.520e-15
Identity = 42/76 (55.26%), Postives = 54/76 (71.05%), Query Frame = -3
Query:  310 VLLISXXXXXXXXXXGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXKTIEVKIA 537
            VL++S           AKY+RMERR+GKFMRKFVLP+NA+V+ ++AVC+DGVLTVTV+          KTIEVK+A
Sbjct:   89 VLVVSGERRREEREDDAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVLTVTVEKLPPPEPKKPKTIEVKVA 164          
BLAST of CB304961 vs. ExPASy Swiss-Prot
Match: HSP18_ORYSJ (18.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.0 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.291e-15
Identity = 41/59 (69.49%), Postives = 48/59 (81.36%), Query Frame = -3
Query:  310 KYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXKTIEVKIA 486
            KY+RMERR+GKFMRKFVLP+NA+V+ ISAVCQDGVLTVTV+          KTIEVK+A
Sbjct:  108 KYLRMERRMGKFMRKFVLPDNADVDKISAVCQDGVLTVTVEKLPPPEPKKPKTIEVKVA 166          
BLAST of CB304961 vs. ExPASy Swiss-Prot
Match: HSP22_IPONI (18.8 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-2 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.613e-15
Identity = 42/59 (71.19%), Postives = 47/59 (79.66%), Query Frame = -3
Query:  310 KYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXKTIEVKIA 486
            KY+RMERRVGKFMRKFVLPENANVEAI+AV QDGVL VTV+          KT+EVK+A
Sbjct:  109 KYLRMERRVGKFMRKFVLPENANVEAINAVYQDGVLQVTVEKLPPPEPKKPKTVEVKVA 167          
BLAST of CB304961 vs. ExPASy Swiss-Prot
Match: HSP21_MAIZE (17.5 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.331e-15
Identity = 40/60 (66.67%), Postives = 49/60 (81.67%), Query Frame = -3
Query:  310 AKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXKTIEVKIA 489
            AKY+RMERR+GKFMRKFVLP+NA+++ ISAVC+DGVLTVTV+          KTIEVK+A
Sbjct:  102 AKYLRMERRMGKFMRKFVLPDNADMDKISAVCRDGVLTVTVEKLPPPEPKKPKTIEVKVA 161          
BLAST of CB304961 vs. ExPASy Swiss-Prot
Match: HSP23_MAIZE (17.0 kDa class II heat shock protein OS=Zea mays GN=HSP18 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.251e-14
Identity = 38/60 (63.33%), Postives = 49/60 (81.67%), Query Frame = -3
Query:  310 AKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXKTIEVKIA 489
            AKY+RMERR+GKFMRKFVLP+NA+V+ ++AVC+DGVLTVTV+          KTIE+K+A
Sbjct:   95 AKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVLTVTVEKLPPPEPKKPKTIEIKVA 154          
BLAST of CB304961 vs. ExPASy Swiss-Prot
Match: HSP21_HELAN (17.9 kDa class II heat shock protein OS=Helianthus annuus GN=HSP17.9 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.133e-14
Identity = 42/76 (55.26%), Postives = 52/76 (68.42%), Query Frame = -3
Query:  310 VLLISXXXXXXXXXXGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXKTIEVKIA 537
            VL+IS          G KYVRMERR+GKFM+KF LPE+AN + ISA+CQDGVLTVTV+          KTI+V++A
Sbjct:   85 VLVISGKRNREEEKEGVKYVRMERRMGKFMKKFALPEDANTDKISAICQDGVLTVTVEKLPPPEPKKPKTIQVQVA 160          
The following BLAST results are available for this feature:
BLAST of CB304961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
HSP21_SOLPE5.998e-1764.4717.3 kDa class II heat shock protein OS=Solanum pe... [more]
HSP21_IPONI1.477e-1572.8817.2 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP21_SOYBN1.929e-1559.2117.9 kDa class II heat shock protein OS=Glycine ma... [more]
HSP21_PEA1.929e-1559.2117.1 kDa class II heat shock protein OS=Pisum sati... [more]
HSP22_MAIZE2.520e-1555.2617.8 kDa class II heat shock protein OS=Zea mays P... [more]
HSP18_ORYSJ3.291e-1569.4918.0 kDa class II heat shock protein OS=Oryza sati... [more]
HSP22_IPONI5.613e-1571.1918.8 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP21_MAIZE7.331e-1566.6717.5 kDa class II heat shock protein OS=Zea mays P... [more]
HSP23_MAIZE1.251e-1463.3317.0 kDa class II heat shock protein OS=Zea mays G... [more]
HSP21_HELAN2.133e-1455.2617.9 kDa class II heat shock protein OS=Helianthus... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_G05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_G05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304961 ID=CB304961; Name=CB304961; organism=Citrus sinensis; type=EST; length=539bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGATAAAAGCTGGATTTTT
CATTAATTATAACAACTAGATGTCTACCAGTAGACAGCCGTCAGCTTCCC
CTCCGGAATGCTAAAGACCGAACCGCAAACCAGTGAACAGAGAGAATTTT
CGAAAAAAAGGGAAGAAAAACAAAAAAAGAAAAAGGAAGAGGAGGTTACA
GAGGCATAGTACCGTCACACCCACAAGCAAAATTATTCATAACAACAACC
GGCAAATAGAAAAGACATCAGCACCCACAATCCAGCATATTCTCTCTCTT
TAAAGTTCAAGCAATCTTAACCTCAATGGTCTTGGGCTTCTTGGGCTCCG
GCGGTGGCAGCTTATCGACGGTCACAGTCAACACTCCGTCCTGACACACA
GCCGAAATGGCTTCAACGTTAGCATTCTCAGGCAGCACAAATTTCCTCAT
AAACTTGCCGACCCTCCTCTCCATTCTCACATACTTGGCCCCCTCTTTCT
CCTCCTCCCGCTTCCTCTCTCCGCTTATGAGCAGCACAT
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