CB304972

Overview
NameCB304972
Unique NameCB304972
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length544
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12449 contig Csv1_Contig12449:963..1506. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304972 vs. ExPASy Swiss-Prot
Match: KNOS3_ORYSJ (Homeobox protein knotted-1-like 3 OS=Oryza sativa subsp. japonica GN=HOS66 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.056e-24
Identity = 48/54 (88.89%), Postives = 50/54 (92.59%), Query Frame = -2
Query:  382 VLKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQIINWFINQRKRNWHSNSQXVT 543
            +LK WWQQHSKWPYPTEDDKAKLVEETGLQLKQI NWFINQRKRNWH+NSQ  T
Sbjct:  254 ILKQWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHNNSQTST 307          
BLAST of CB304972 vs. ExPASy Swiss-Prot
Match: KNAT7_ARATH (Homeobox protein knotted-1-like 7 OS=Arabidopsis thaliana GN=KNAT7 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.161e-23
Identity = 47/54 (87.04%), Postives = 49/54 (90.74%), Query Frame = -2
Query:  382 VLKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQIINWFINQRKRNWHSNSQXVT 543
            VLK WWQQH KWPYPTEDDKAKLVEETGLQLKQI NWFINQRKRNWH+NS  +T
Sbjct:  230 VLKNWWQQHCKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHNNSHSLT 283          
BLAST of CB304972 vs. ExPASy Swiss-Prot
Match: HD1_BRANA (Homeobox protein HD1 OS=Brassica napus GN=HD1 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.161e-23
Identity = 47/54 (87.04%), Postives = 49/54 (90.74%), Query Frame = -2
Query:  382 VLKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQIINWFINQRKRNWHSNSQXVT 543
            VLK WWQQH KWPYPTEDDKAKLVEETGLQLKQI NWFINQRKRNWH+NS  +T
Sbjct:  233 VLKNWWQQHCKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHNNSHSLT 286          
BLAST of CB304972 vs. ExPASy Swiss-Prot
Match: KNOX1_MAIZE (Homeobox protein knotted-1-like 1 (Fragment) OS=Zea mays GN=KNOX1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.284e-22
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = -2
Query:  397 VLKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQIINWFINQRKRNWHSN 543
            +LK WWQ+HSKWPYPTEDDKAKLVEETGLQLKQI NWFINQRKRNWH+N
Sbjct:   40 ILKQWWQEHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHNN 88          
BLAST of CB304972 vs. ExPASy Swiss-Prot
Match: KNOX7_MAIZE (Homeobox protein knotted-1-like 7 (Fragment) OS=Zea mays GN=KNOX7 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.735e-22
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = -2
Query:  397 VLKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQIINWFINQRKRNWHSN 543
            VLK WWQ HSKWPYPTEDDKA+LV+ETGLQLKQI NWFINQRKRNWHSN
Sbjct:   37 VLKAWWQAHSKWPYPTEDDKARLVQETGLQLKQINNWFINQRKRNWHSN 85          
BLAST of CB304972 vs. ExPASy Swiss-Prot
Match: KNOX6_MAIZE (Homeobox protein knotted-1-like 6 (Fragment) OS=Zea mays GN=KNOX6 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.735e-22
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = -2
Query:  397 VLKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQIINWFINQRKRNWHSN 543
            VLK WWQ HSKWPYPTEDDKA+LV+ETGLQLKQI NWFINQRKRNWHSN
Sbjct:   37 VLKAWWQAHSKWPYPTEDDKARLVQETGLQLKQINNWFINQRKRNWHSN 85          
BLAST of CB304972 vs. ExPASy Swiss-Prot
Match: KNOS2_ORYSJ (Homeobox protein knotted-1-like 2 OS=Oryza sativa subsp. japonica GN=HOS58 PE=2 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 4.879e-22
Identity = 43/49 (87.76%), Postives = 46/49 (93.88%), Query Frame = -2
Query:  397 VLKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQIINWFINQRKRNWHSN 543
            +LK WWQ HSKWPYPTEDDKA+LV+ETGLQLKQI NWFINQRKRNWHSN
Sbjct:  241 ILKAWWQAHSKWPYPTEDDKARLVQETGLQLKQINNWFINQRKRNWHSN 289          
BLAST of CB304972 vs. ExPASy Swiss-Prot
Match: KNAT4_ARATH (Homeobox protein knotted-1-like 4 OS=Arabidopsis thaliana GN=KNAT4 PE=1 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 4.879e-22
Identity = 44/54 (81.48%), Postives = 48/54 (88.89%), Query Frame = -2
Query:  382 VLKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQIINWFINQRKRNWHSNSQXVT 543
            VLK+WWQ HSKWPYPTE+DKA+LV+ETGLQLKQI NWFINQRKRNWHSN    T
Sbjct:  322 VLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSST 375          
BLAST of CB304972 vs. ExPASy Swiss-Prot
Match: KNAT3_ARATH (Homeobox protein knotted-1-like 3 OS=Arabidopsis thaliana GN=KNAT3 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.372e-22
Identity = 44/54 (81.48%), Postives = 47/54 (87.04%), Query Frame = -2
Query:  382 VLKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQIINWFINQRKRNWHSNSQXVT 543
            VLK WWQ HSKWPYPTE+DKA+LV+ETGLQLKQI NWFINQRKRNWHSN    T
Sbjct:  358 VLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSST 411          
BLAST of CB304972 vs. ExPASy Swiss-Prot
Match: KNAP3_MALDO (Homeobox protein knotted-1-like 3 OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.372e-22
Identity = 44/54 (81.48%), Postives = 47/54 (87.04%), Query Frame = -2
Query:  382 VLKTWWQQHSKWPYPTEDDKAKLVEETGLQLKQIINWFINQRKRNWHSNSQXVT 543
            VLK WWQ HSKWPYPTE+DKA+LV+ETGLQLKQI NWFINQRKRNWHSN    T
Sbjct:  366 VLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTST 419          
The following BLAST results are available for this feature:
BLAST of CB304972 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
KNOS3_ORYSJ3.056e-2488.89Homeobox protein knotted-1-like 3 OS=Oryza sativa ... [more]
KNAT7_ARATH1.161e-2387.04Homeobox protein knotted-1-like 7 OS=Arabidopsis t... [more]
HD1_BRANA1.161e-2387.04Homeobox protein HD1 OS=Brassica napus GN=HD1 PE=2... [more]
KNOX1_MAIZE1.284e-2289.80Homeobox protein knotted-1-like 1 (Fragment) OS=Ze... [more]
KNOX7_MAIZE3.735e-2289.80Homeobox protein knotted-1-like 7 (Fragment) OS=Ze... [more]
KNOX6_MAIZE3.735e-2289.80Homeobox protein knotted-1-like 6 (Fragment) OS=Ze... [more]
KNOS2_ORYSJ4.879e-2287.76Homeobox protein knotted-1-like 2 OS=Oryza sativa ... [more]
KNAT4_ARATH4.879e-2281.48Homeobox protein knotted-1-like 4 OS=Arabidopsis t... [more]
KNAT3_ARATH6.372e-2281.48Homeobox protein knotted-1-like 3 OS=Arabidopsis t... [more]
KNAP3_MALDO6.372e-2281.48Homeobox protein knotted-1-like 3 OS=Malus domesti... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_A03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_A03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304972 ID=CB304972; Name=CB304972; organism=Citrus sinensis; type=EST; length=544bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAATTAGAACGAAGCAACT
TAAAAACCTCGAGTTTCTTCAACCTGGTATAAGCTAGAAATTACGTGGAA
ACGTAATGAATCTACAAACTTATAAGAAAGCTATGTAAATCCCATCTCAT
CTATTACATTCTATGGAAGCTACCAAGGCTTTCCAAGTTTCTTCAGAGCC
TTCACAAAAGTTAGCACCAAAACGATATGTACCCCAGAGCCACAAAAGCA
AGCTAGCTAGATAGAGCTATATGTGTGTTGACACAAAAGTGAGTAACTCC
TTCATTGCTCATACATCATTAATTCATCGTCAAGATATATTTGGAGATAT
CTCTCTACCTTTTGCGCTTTGACTTTAAAGACGTCACNNNCTGGGAGTTG
CTGTGCCAGTTGCGCTTCCTCTGGTTGATGAACCAGTTGATGATTTGCTT
TAGTTGCAAGCCTGTCTCCTCCACTAGCTTTGCCTTGTCATCTTCAGTTG
GGTATGGCCATTTGGAGTGTTGCTGCCACCAAGTCTTGAGCACT
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