CB304976

Overview
NameCB304976
Unique NameCB304976
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1525 contig Csv1_Contig1525:259..837. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL112_ARATH (60S ribosomal protein L11-2 OS=Arabidopsis thaliana GN=RPL11B PE=2 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 9.693e-51
Identity = 100/120 (83.33%), Postives = 103/120 (85.83%), Query Frame = -2
Query:  219 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVILNKSQNI 578
            IRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFS TGCFGFGIQEHIDLGIKYDPSTGIYGMDF+VVLE                GIQHRVTK+DAMKWFQVKYEGVILNKSQNI
Sbjct:   61 IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 180          
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL111_ARATH (60S ribosomal protein L11-1 OS=Arabidopsis thaliana GN=RPL11A PE=1 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 9.693e-51
Identity = 100/120 (83.33%), Postives = 103/120 (85.83%), Query Frame = -2
Query:  219 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVILNKSQNI 578
            IRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFS TGCFGFGIQEHIDLGIKYDPSTGIYGMDF+VVLE                GIQHRVTK+DAMKWFQVKYEGVILNKSQNI
Sbjct:   61 IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 180          
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL11_MEDSA (60S ribosomal protein L11 OS=Medicago sativa GN=RPL11 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.266e-50
Identity = 101/120 (84.17%), Postives = 102/120 (85.00%), Query Frame = -2
Query:  219 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVILNKSQNI 578
            IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFS TGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLE                GIQHRVTK+DAMKWFQVKYEGVILNKSQ I
Sbjct:   61 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQAI 180          
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL11_ORYSJ (60S ribosomal protein L11 OS=Oryza sativa subsp. japonica GN=RPL11 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 1.828e-49
Identity = 98/118 (83.05%), Postives = 101/118 (85.59%), Query Frame = -2
Query:  225 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVILNKSQ 578
            IRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFS TGCFGFGIQEHIDLGIKYDPSTGIYGMDF+VVLE                GIQHRVTKEDAMKWFQVKYEGVILNK+Q
Sbjct:   61 IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQ 178          
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL11_ORYSI (60S ribosomal protein L11 OS=Oryza sativa subsp. indica GN=RPL11 PE=2 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 1.828e-49
Identity = 98/118 (83.05%), Postives = 101/118 (85.59%), Query Frame = -2
Query:  225 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVILNKSQ 578
            IRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFS TGCFGFGIQEHIDLGIKYDPSTGIYGMDF+VVLE                GIQHRVTKEDAMKWFQVKYEGVILNK+Q
Sbjct:   61 IRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQ 178          
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL11_CHLRE (60S ribosomal protein L11 OS=Chlamydomonas reinhardtii GN=RPL11 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.452e-38
Identity = 75/117 (64.10%), Postives = 93/117 (79.49%), Query Frame = -2
Query:  228 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVILNKS 578
            IRRNEKI+CYVTVRG+KA  L++ GL VKE+EL+R+NFS TG FGFGIQEHIDLG+KYDPSTGIYGMDF+V LE                G++H+VTKEDA+KWFQ +++GV+LNK+
Sbjct:   51 IRRNEKISCYVTVRGEKAYDLVKRGLAVKEFELIRKNFSDTGNFGFGIQEHIDLGLKYDPSTGIYGMDFYVCLERRGYRVARRRKQKAHVGVKHKVTKEDAIKWFQQEFDGVVLNKA 167          
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL11_DROME (60S ribosomal protein L11 OS=Drosophila melanogaster GN=RpL11 PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 7.967e-37
Identity = 77/115 (66.96%), Postives = 86/115 (74.78%), Query Frame = -2
Query:  234 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVILN 578
            IRRNEKIA + TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DF+VVL                 G QHR+TKEDAMKWFQ KY+G+ILN
Sbjct:   67 IRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRENFSSTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGYNVNHRKRKSGTVGFQHRLTKEDAMKWFQQKYDGIILN 181          
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL11_SCHPO (60S ribosomal protein L11 OS=Schizosaccharomyces pombe GN=rpl11a PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 7.456e-35
Identity = 71/116 (61.21%), Postives = 84/116 (72.41%), Query Frame = -2
Query:  231 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVILNK 578
            IRRNEKIAC+VTVRG KA ++LE GLKVKEYEL +RNFS TG FGFGIQEHIDLGIKYDPS GIYGMDF+VV++                G  H++  ED + WF+ KY+ V+L K
Sbjct:   59 IRRNEKIACHVTVRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGIYGMDFYVVMDRPGMRVARRKAQRGRVGYTHKINAEDTINWFKQKYDAVVLGK 174          
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL11_RAT (60S ribosomal protein L11 OS=Rattus norvegicus GN=Rpl11 PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 3.701e-34
Identity = 71/114 (62.28%), Postives = 85/114 (74.56%), Query Frame = -2
Query:  237 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVIL 578
            IRRNEKIA + TVRG KA ++LE GLKV+EYEL + NFS TG FGFGIQEHIDLGIKYDPS GIYG+DF+VVL                 G +HR++KE+AM+WFQ KY+G+IL
Sbjct:   62 IRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIIL 175          
BLAST of CB304976 vs. ExPASy Swiss-Prot
Match: RL11_PONAB (60S ribosomal protein L11 OS=Pongo abelii GN=RPL11 PE=2 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 3.701e-34
Identity = 71/114 (62.28%), Postives = 85/114 (74.56%), Query Frame = -2
Query:  237 IRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSGTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVIL 578
            IRRNEKIA + TVRG KA ++LE GLKV+EYEL + NFS TG FGFGIQEHIDLGIKYDPS GIYG+DF+VVL                 G +HR++KE+AM+WFQ KY+G+IL
Sbjct:   62 IRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSITDKKRRTGCIGAKHRISKEEAMRWFQQKYDGIIL 175          
The following BLAST results are available for this feature:
BLAST of CB304976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RL112_ARATH9.693e-5183.3360S ribosomal protein L11-2 OS=Arabidopsis thalian... [more]
RL111_ARATH9.693e-5183.3360S ribosomal protein L11-1 OS=Arabidopsis thalian... [more]
RL11_MEDSA1.266e-5084.1760S ribosomal protein L11 OS=Medicago sativa GN=RP... [more]
RL11_ORYSJ1.828e-4983.0560S ribosomal protein L11 OS=Oryza sativa subsp. j... [more]
RL11_ORYSI1.828e-4983.0560S ribosomal protein L11 OS=Oryza sativa subsp. i... [more]
RL11_CHLRE1.452e-3864.1060S ribosomal protein L11 OS=Chlamydomonas reinhar... [more]
RL11_DROME7.967e-3766.9660S ribosomal protein L11 OS=Drosophila melanogast... [more]
RL11_SCHPO7.456e-3561.2160S ribosomal protein L11 OS=Schizosaccharomyces p... [more]
RL11_RAT3.701e-3462.2860S ribosomal protein L11 OS=Rattus norvegicus GN=... [more]
RL11_PONAB3.701e-3462.2860S ribosomal protein L11 OS=Pongo abelii GN=RPL11... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_A07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_A07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304976 ID=CB304976; Name=CB304976; organism=Citrus sinensis; type=EST; length=579bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTATCTGCGATTTTTAGTG
CAGCTAAGCCATAATCTTGATAATAAAATTTAAATAGACAAATAACAAAA
TATCTTGAACTACCAAAAGCATCTAACTCAGGTTTGCAAAACGCCAAGTA
ATAGCCAGTGTCTACAAACATCAACACTATAAATGCAAAATCGTCATCAC
ACAAAGGGCTTAAGCACCAATATTCTGGGACTTGTTGAGGATCACACCTT
CGTATTTGACCTGGAACCATTTCATTGCATCTTCCTTCGTGACACGGTGC
TGAATCCCAACACGAGACTTGCACCTACGGCGTCGACCTACACGATAACC
CGGGCGCTCCAGAACCACAAAGAAATCCATACCATAAATTCCAGTGGAAG
GATCATACTTGATTCCAAGATCAATATGCTCTTGAATACCAAAGCCAAAA
CAGCCAGTGCCACTGAAATTCCGACGCAGAAGCTCATATTCCTTCACCTT
CAATCCACTCTCCAAAAGCTGCATTGCCTTGTCACCTCTAACAGTCACAT
AGCATGCAATCTTCTCATTACGTCTGATC
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