CB304983

Overview
NameCB304983
Unique NameCB304983
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304983 vs. ExPASy Swiss-Prot
Match: POLG_ASGVP (Genome polyprotein OS=Apple stem grooving virus (strain P-209) PE=4 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 6.746e-67
Identity = 121/139 (87.05%), Postives = 126/139 (90.65%), Query Frame = -3
Query:  213 VHYNLTSSPXXXXXXXXXXXXEGTSGEKTKIWRIDLSNIVPELKTFAATSKQNSLNECTFRKLCEPFADLAREFLHERWSKGLATNIYKKWPKAFEKSPWVAFDFATGLKMNRLTPDEKQVIDRMTKRLFRTEGQKGVF 629
            VHYNLT++P             G+SGEKTKIWRIDLSN+VPELKTFAATS+QNSLNECTFRKLCEPFADLAREFLHERWSKGLATNIYKKWPKAFEKSPWVAFDFATGLKMNRLTPDEKQVIDRMTKRLFRTEGQKGVF
Sbjct: 1955 VHYNLTTTPKEGETDEGRKARAGSSGEKTKIWRIDLSNVVPELKTFAATSRQNSLNECTFRKLCEPFADLAREFLHERWSKGLATNIYKKWPKAFEKSPWVAFDFATGLKMNRLTPDEKQVIDRMTKRLFRTEGQKGVF 2093          
BLAST of CB304983 vs. ExPASy Swiss-Prot
Match: POLG_ASGVK (Genome polyprotein OS=Apple stem grooving virus (strain Korea) PE=3 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 4.372e-66
Identity = 120/139 (86.33%), Postives = 127/139 (91.37%), Query Frame = -3
Query:  213 VHYNLTSSPXXXXXXXXXXXXEGTSGEKTKIWRIDLSNIVPELKTFAATSKQNSLNECTFRKLCEPFADLAREFLHERWSKGLATNIYKKWPKAFEKSPWVAFDFATGLKMNRLTPDEKQVIDRMTKRLFRTEGQKGVF 629
            VHYNLT++P            EG+SGEK+KIWRIDLSN+VPELKTFAATS+QNSLNECTFRKLCEPFADLAREFLHERWSKGLATNIYKKWPKAFEKSPWVAFDFATGLKMN+LTPDEKQVIDRMTKRLFRTEGQKGVF
Sbjct: 1955 VHYNLTTTPKEGETEEQKKAREGSSGEKSKIWRIDLSNVVPELKTFAATSRQNSLNECTFRKLCEPFADLAREFLHERWSKGLATNIYKKWPKAFEKSPWVAFDFATGLKMNKLTPDEKQVIDRMTKRLFRTEGQKGVF 2093          
BLAST of CB304983 vs. ExPASy Swiss-Prot
Match: COAT_ACLSP (Coat protein OS=Apple chlorotic leaf spot virus (isolate plum P863) PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.058e-11
Identity = 38/102 (37.25%), Postives = 58/102 (56.86%), Query Frame = -3
Query:  222 DLSNIVPELKTFAATSKQNSLNECTFRKLCEPFADLAREFLHERWSKGLATNIYKKWPKAFEKSPWVAFDFATGLKMNRLTPDEKQVIDRMTKRLFRTEGQK 527
            +L  +V  +K F  TS   ++N+ TFR++CE FA  AR  L +   KG+ TN++   P+   K P + FDF  GL M  +   +++VI  M +RL +TE  K
Sbjct:   76 NLKEVVNLIKAFKTTSSDPNINKMTFRQVCEAFAPEARNGLVKLKYKGVFTNLFTTMPEVGSKYPELMFDFNKGLNMFIMNKAQQKVITNMNRRLLQTEFAK 177          
The following BLAST results are available for this feature:
BLAST of CB304983 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
POLG_ASGVP6.746e-6787.05Genome polyprotein OS=Apple stem grooving virus (s... [more]
POLG_ASGVK4.372e-6686.33Genome polyprotein OS=Apple stem grooving virus (s... [more]
COAT_ACLSP1.058e-1137.25Coat protein OS=Apple chlorotic leaf spot virus (i... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_B06 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_B06 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304983 ID=CB304983; Name=CB304983; organism=Citrus sinensis; type=EST; length=631bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTAAATGGATAAACTCCATAT
ACTAGAAAAAACCACATAAACCCTGAAATTCTCAGAAAACAGGGTGAACC
CTTTATTTAAGTATAAAGGCAGGCATGTCAACCTGCAAGACCGCGACCAA
TTTTGCGGAATTTCACACGACTCCTAACCCTCCAGTTCCAGGTTACTCTC
CGAACCTGCCTCGAAAACCCCTTTTTGTCCTTCAGTACGAAAAAGCCTCT
TTGTCATTCTATCAATCACCTGTTTTTCATCAGGTGTTAGACGATTCATT
TTAAGACCGGTGGCAAAATCAAACGCCACCCAAGGGCTCTTTTCGAAAGC
TTTGGGCCATTTCTTATAAATATTTGTGGCCAATCCTTTGGACCACCTTT
CATGAAGAAATTCACGAGCCAAATCAGCAAAAGGCTCGCAAAGCTTTCTG
AATGTACATTCGTTCAAAGAATTTTGCTTAGAAGTAGCAGCAAAGGTTTT
CAATTCAGGTACTATATTTGACAAGTCAATTCTCCAAATTTTAGTTTTTT
CACCAGACGTCCCTTCCCTGGCCTCCTTTTGCTCTTCAGTTTCCTTTTCT
TTTGGGGACGATGTCAAATTGTAATGAACCG
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