CB304988

Overview
NameCB304988
Unique NameCB304988
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304988_ssr365 microsatellite CB304988_ssr365:365..376. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2047 contig Csv1_Contig2047:153..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304988 vs. ExPASy Swiss-Prot
Match: RL212_ARATH (60S ribosomal protein L21-2 OS=Arabidopsis thaliana GN=RPL21E PE=2 SV=1)

HSP 1 Score: 299.671 bits (766), Expect = 9.185e-81
Identity = 139/153 (90.85%), Postives = 148/153 (96.73%), Query Frame = -2
Query:  208 RDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 666
            RDLFARPFRKKGYIPLSTYLRT+K+GDYVDVKVNGA+HKGMPHKFYHGRTGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRC EEFKLRKK+ND LKADAKARGE ISTKRQPKGPKPGFMVEG TLETVTPIPYDVVNDLKGGY
Sbjct:   12 RDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAKARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164          
BLAST of CB304988 vs. ExPASy Swiss-Prot
Match: RL211_ARATH (60S ribosomal protein L21-1 OS=Arabidopsis thaliana GN=RPL21A PE=2 SV=2)

HSP 1 Score: 298.901 bits (764), Expect = 1.567e-80
Identity = 139/153 (90.85%), Postives = 147/153 (96.08%), Query Frame = -2
Query:  208 RDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 666
            RDLFARPFRKKGYIPLSTYLRT+K+GDYVDVKVNGA+HKGMPHKFYHGRTGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRC EEFKLRKKKNDELKA AKA GE ISTKRQPKGPKPGFMVEG TLETVTPIPYDVVNDLKGGY
Sbjct:   12 RDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAKANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164          
BLAST of CB304988 vs. ExPASy Swiss-Prot
Match: RL21_CYAPA (60S ribosomal protein L21 OS=Cyanophora paradoxa GN=RPL21 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.585e-40
Identity = 88/147 (59.86%), Postives = 107/147 (72.79%), Query Frame = -2
Query:  235 RDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAK-ARGEVISTKRQPKGPKPGFMV--EGATLETVTPIPYD 666
            R LFAR F+  G + LSTYL  +KIG+YVDV  N AVHKGMP K+YHGRTG VWNVTKRAIGVEINK+V +RIIKKRIHVR++HV+ S C + F  R K+ND++K DA  A+  V STKR P  PK G ++  +G   ET   IPY+
Sbjct:   12 RALFARAFKTNGPVHLSTYLTNFKIGEYVDVVGNAAVHKGMPFKYYHGRTGIVWNVTKRAIGVEINKRVRHRIIKKRIHVRIDHVKKSSCRDSFLKRVKENDKIKHDAHVAKLPVPSTKRLPVLPKAGAIIKSKGQVPETCHAIPYE 158          
BLAST of CB304988 vs. ExPASy Swiss-Prot
Match: RL21A_YEAST (60S ribosomal protein L21-A OS=Saccharomyces cerevisiae GN=RPL21A PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.752e-39
Identity = 76/146 (52.05%), Postives = 106/146 (72.60%), Query Frame = -2
Query:  235 RDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMV--EGATLETVTPIPYD 666
            R +F R FRK G + LSTYL+ YK+GD VD+K NG++ KGMPHKFY G+TG V+NVTK ++GV INK VGNR ++KR+++RVEH++ S+C +EF  R K N   +A+AKA+G  +  KRQP  P+   +V  EG   +T+ P+PY+
Sbjct:   12 RYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGKTGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKCRQEFLERVKANAAKRAEAKAQGVAVQLKRQPAQPRESRIVSTEGNVPQTLAPVPYE 157          
BLAST of CB304988 vs. ExPASy Swiss-Prot
Match: RL21B_YEAST (60S ribosomal protein L21-B OS=Saccharomyces cerevisiae GN=RPL21B PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.904e-39
Identity = 75/146 (51.37%), Postives = 106/146 (72.60%), Query Frame = -2
Query:  235 RDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMV--EGATLETVTPIPYD 666
            R +F R FRK G + +STYL+ YK+GD VD+K NG++ KGMPHKFY G+TG V+NVTK ++GV INK VGNR ++KR+++RVEH++ S+C +EF  R K N   +A+AKA+G  +  KRQP  P+   +V  EG   +T+ P+PY+
Sbjct:   12 RYMFQRDFRKHGAVHMSTYLKIYKVGDIVDIKANGSIQKGMPHKFYQGKTGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKCRQEFLERVKANAAKRAEAKAQGVAVQLKRQPAQPRESRIVSTEGNVPQTLAPVPYE 157          
BLAST of CB304988 vs. ExPASy Swiss-Prot
Match: RL21_DICDI (60S ribosomal protein L21 OS=Dictyostelium discoideum GN=rpl21 PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.136e-38
Identity = 77/148 (52.03%), Postives = 100/148 (67.57%), Query Frame = -2
Query:  229 RDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMVEGATLE--TVTPIPYDVV 666
            R LF+R FR  G +  +T+LRT+++GDYVD+K  G VHKGMPHKFYHGRTGRVWNVT RA+GV INK+VG RII K+IHVR EHV+PS        R ++N +   +AK  G+ +  +R P  PK GF V     E   V P+ Y+++
Sbjct:   12 RYLFSRGFRNHGLLQTTTFLRTFRLGDYVDIKATGNVHKGMPHKFYHGRTGRVWNVTPRAVGVIINKRVGPRIIAKKIHVRTEHVKPSNSMAAHLKRIQENKKAVVEAKKAGKWVDVRRNPAAPKDGFFVNPRNTEFVEVKPVKYELL 159          
BLAST of CB304988 vs. ExPASy Swiss-Prot
Match: RL21_HUMAN (60S ribosomal protein L21 OS=Homo sapiens GN=RPL21 PE=1 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 7.362e-38
Identity = 74/146 (50.68%), Postives = 102/146 (69.86%), Query Frame = -2
Query:  235 RDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMV--EGATLETVTPIPYD 666
            R +F+RPFRK G +PL+TY+R YK GD VD+K  G V KGMPHK YHG+TGRV+NVT+ A+G+ +NKQV  +I+ KRI+VR+EH++ S+  + F  R K+ND+ K +AK +G  +  KRQP  P+    V   G   E + PIPY+
Sbjct:   12 RYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYE 157          
BLAST of CB304988 vs. ExPASy Swiss-Prot
Match: RL21_CHILA (60S ribosomal protein L21 OS=Chinchilla lanigera GN=RPL21 PE=2 SV=3)

HSP 1 Score: 155.992 bits (393), Expect = 1.640e-37
Identity = 73/146 (50.00%), Postives = 102/146 (69.86%), Query Frame = -2
Query:  235 RDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMV--EGATLETVTPIPYD 666
            R +F+RP+RK G +PL+TY+R YK GD VD+K  G V KGMPHK YHG+TGRV+NVT+ A+G+ +NKQV  +I+ KRI+VR+EH++ S+  + F  R K+ND+ K +AK +G  +  KRQP  P+    V   G   E + PIPY+
Sbjct:   12 RYMFSRPYRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYE 157          
BLAST of CB304988 vs. ExPASy Swiss-Prot
Match: RL21B_SCHPO (60S ribosomal protein L21-B OS=Schizosaccharomyces pombe GN=rpl21b PE=2 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 1.640e-37
Identity = 76/146 (52.05%), Postives = 103/146 (70.55%), Query Frame = -2
Query:  235 RDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMVEGATLETVT--PIPYD 666
            R  F R FR+ G I LSTYL+TYK+GD VD+KVNGAV KGMPHK+YHG+TG V+NVT+ ++GV I K VGNR ++KR++VR+EHV+ S+C ++F  R K N+  + +AKA+G+ +  +RQP  P     V     E VT  P+ YD
Sbjct:   12 RYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAPPATAHFVSTENNEPVTLHPVAYD 157          
BLAST of CB304988 vs. ExPASy Swiss-Prot
Match: RL21A_SCHPO (60S ribosomal protein L21-A OS=Schizosaccharomyces pombe GN=rpl21a PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.640e-37
Identity = 76/146 (52.05%), Postives = 103/146 (70.55%), Query Frame = -2
Query:  235 RDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMVEGATLETVT--PIPYD 666
            R  F R FR+ G I LSTYL+TYK+GD VD+KVNGAV KGMPHK+YHG+TG V+NVT+ ++GV I K VGNR ++KR++VR+EHV+ S+C ++F  R K N+  + +AKA+G+ +  +RQP  P     V     E VT  P+ YD
Sbjct:   12 RYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAPPAKAHFVSTENNEPVTLHPVAYD 157          
The following BLAST results are available for this feature:
BLAST of CB304988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RL212_ARATH9.185e-8190.8560S ribosomal protein L21-2 OS=Arabidopsis thalian... [more]
RL211_ARATH1.567e-8090.8560S ribosomal protein L21-1 OS=Arabidopsis thalian... [more]
RL21_CYAPA1.585e-4059.8660S ribosomal protein L21 OS=Cyanophora paradoxa G... [more]
RL21A_YEAST1.752e-3952.0560S ribosomal protein L21-A OS=Saccharomyces cerev... [more]
RL21B_YEAST3.904e-3951.3760S ribosomal protein L21-B OS=Saccharomyces cerev... [more]
RL21_DICDI1.136e-3852.0360S ribosomal protein L21 OS=Dictyostelium discoid... [more]
RL21_HUMAN7.362e-3850.6860S ribosomal protein L21 OS=Homo sapiens GN=RPL21... [more]
RL21_CHILA1.640e-3750.0060S ribosomal protein L21 OS=Chinchilla lanigera G... [more]
RL21B_SCHPO1.640e-3752.0560S ribosomal protein L21-B OS=Schizosaccharomyces... [more]
RL21A_SCHPO1.640e-3752.0560S ribosomal protein L21-A OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_C04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_C04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304988 ID=CB304988; Name=CB304988; organism=Citrus sinensis; type=EST; length=667bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATCGGAAAACATCTCTTGTT
TCTAATATAAAATGAAGATTAAAAATAAACATCTCTGCAATTGCAGTTCC
TCTCCAAAAACAAAACTAATAAGGATGAAAATACATCCAAATAAGACCAT
GTCCAGAAAAGTCTGCAACAAGTAACAAAACAGCAACAATACCAAAAAGA
TAACCTAGTAACCACCCTTAAGATCATTGACGACATCATAAGGAATAGGA
GTGACAGTTTCCAATGTTGCACCTTCCACCATGAAACCTGGTTTAGGGCC
CTTTGGCTGCCTCTTTGTACTGATGACCTCACCTCTTGCCTTAGCATCTG
CCTTGAGCTCATCATTCTTCTTCTTCCTCAGCTTGAACTCCTCGGTACAC
CTTGAAGGTTGAACATGCTCCACACGAACATGAATCCTCTTCTTGATGAT
CCTGTTACCAACCTGCTTGTTAATCTCCACGCCGATGGCGCGCTTGGTGA
CATTCCAGACACGGCCTGTACGCCCATGGTAGAACTTGTGGGGCATACCT
TTGTGAACGGCGCCGTTCACTTTGACGTCAACGTAGTCGCCGATTTTGTA
AGTCCTAAGGTAAGTGGACAAGGGGATGTAACCCTTCTTTCTGAAGGGGC
GTGCGAACAAATCCCTT
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