CB304997

Overview
NameCB304997
Unique NameCB304997
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length539
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13078 contig Csv1_Contig13078:276..817. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL12_PRUAR (60S ribosomal protein L12 OS=Prunus armeniaca GN=RPL12 PE=2 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 6.539e-64
Identity = 121/134 (90.30%), Postives = 130/134 (97.01%), Query Frame = -1
Query:  135 GPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEIPLD 536
            GPLGLSPKKIGEDIAKETA DWKGLRVTVKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKKTKNIKH+G+I+LDDVIEIAK+M+ RSMAK+L+GTVKEIL TCVSVGCTVDGKDP+DLQQEI DGDVEIPLD
Sbjct:   33 GPLGLSPKKIGEDIAKETANDWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHSGHISLDDVIEIAKIMKHRSMAKELAGTVKEILRTCVSVGCTVDGKDPKDLQQEIADGDVEIPLD 166          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL123_ARATH (60S ribosomal protein L12-3 OS=Arabidopsis thaliana GN=RPL12C PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 3.245e-63
Identity = 117/132 (88.64%), Postives = 127/132 (96.21%), Query Frame = -1
Query:  141 GPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEIP 536
            GPLGL+PKKIGEDIAKETAK+WKGLRVTVKLTVQNRQAKV VVPSAAALVIKALKEPERDRKK KNIKHNGNI+ DDVIEIAK+MRPRS+AK+LSGTVKEILGTCVSVGCTVDGKDP+DLQ+EI  GD++IP
Sbjct:   33 GPLGLAPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVIEIAKIMRPRSIAKELSGTVKEILGTCVSVGCTVDGKDPKDLQEEINSGDIDIP 164          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL121_ARATH (60S ribosomal protein L12-1 OS=Arabidopsis thaliana GN=RPL12A PE=1 SV=2)

HSP 1 Score: 238.81 bits (608), Expect = 1.233e-62
Identity = 116/132 (87.88%), Postives = 127/132 (96.21%), Query Frame = -1
Query:  141 GPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEIP 536
            GPLGL+PKKIGEDIAKETAK+WKGLRVTVKLTVQNRQAKV VVPSAAALVIKALKEPERDRKK KNIKHNGNI+ DDV EIA++MRPRS+AK+LSGTV+EILGTCVSVGCTVDGKDP+D+QQEI DG+VEIP
Sbjct:   33 GPLGLAPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPRSIAKELSGTVREILGTCVSVGCTVDGKDPKDIQQEIQDGEVEIP 164          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL122_ARATH (60S ribosomal protein L12-2 OS=Arabidopsis thaliana GN=RPL12B PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 2.747e-62
Identity = 115/132 (87.12%), Postives = 127/132 (96.21%), Query Frame = -1
Query:  141 GPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEIP 536
            GPLGL+PKKIGEDIAKETAK+WKGLRVTVKLTVQNRQAKV VVPSAAALVIKALKEPERDRKK KNIKHNGNI+ DDV EIA++MRPRS+AK+LSGTV+EILGTCVSVGCTVDGKDP+DLQQEI +G++EIP
Sbjct:   33 GPLGLAPKKIGEDIAKETAKEWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPRSIAKELSGTVREILGTCVSVGCTVDGKDPKDLQQEIQEGEIEIP 164          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL12_CHLRE (60S ribosomal protein L12 (Fragment) OS=Chlamydomonas reinhardtii GN=RPL12 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 7.247e-55
Identity = 104/132 (78.79%), Postives = 116/132 (87.88%), Query Frame = -1
Query:  141 GPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEIP 536
            GPLGLSPKKIGEDIAKET KDWKGLR+TVKLTVQNRQAK++V+PSAAALVIKALKEP RDRKK KNIKH G++T+ D+IEIA+VMRPRS AKDL+   KEILGT VSVGC VDGKDPRD+   I DG +EIP
Sbjct:   24 GPLGLSPKKIGEDIAKETLKDWKGLRITVKLTVQNRQAKISVIPSAAALVIKALKEPARDRKKEKNIKHTGSVTMSDIIEIARVMRPRSCAKDLANGCKEILGTAVSVGCKVDGKDPRDVISAIDDGAIEIP 155          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL12_SCHPO (60S ribosomal protein L12 OS=Schizosaccharomyces pombe GN=rpl1201 PE=1 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 1.511e-52
Identity = 99/132 (75.00%), Postives = 120/132 (90.91%), Query Frame = -1
Query:  141 GPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEIP 536
            GPLGLSPKK+GEDIAK T KDWKGLRVTVKLT+QNRQA V+VVPSA+ALVIKALKEP RDRKK KN+ H+GN++LD++IE+A+ MR +S+AK+LSGTVKEILGT  SVGCTVDGK+P D+Q+EI +G++EIP
Sbjct:   33 GPLGLSPKKVGEDIAKAT-KDWKGLRVTVKLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKSLAKELSGTVKEILGTAFSVGCTVDGKNPHDVQKEIDNGEIEIP 163          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL12_CAEEL (60S ribosomal protein L12 OS=Caenorhabditis elegans GN=rpl-12 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 2.042e-49
Identity = 92/132 (69.70%), Postives = 114/132 (86.36%), Query Frame = -1
Query:  141 GPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEIP 536
            GPLGLSPKKIGEDIAK T +DWKGL+VT KLT+QNR AK+ VVPSAA+L++K LKEP RDRKK KN+KHNG++T+D +I+IA++MRPRSMAK L GTVKEILGT  SVGCT+DG+ P D+ + I +G++EIP
Sbjct:   33 GPLGLSPKKIGEDIAKAT-QDWKGLKVTCKLTIQNRVAKIDVVPSAASLIVKELKEPPRDRKKVKNVKHNGDLTVDTIIKIARIMRPRSMAKKLEGTVKEILGTAQSVGCTIDGQHPHDIIESIANGEIEIP 163          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL12_CAEBR (60S ribosomal protein L12 OS=Caenorhabditis briggsae GN=rpl-12 PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 2.042e-49
Identity = 92/132 (69.70%), Postives = 114/132 (86.36%), Query Frame = -1
Query:  141 GPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEIP 536
            GPLGLSPKKIGEDIAK T +DWKGL+VT KLT+QNR AK+ VVPSAA+L++K LKEP RDRKK KN+KHNG++T+D +I+IA++MRPRSMAK L GTVKEILGT  SVGCT+DG+ P D+ + I +G++EIP
Sbjct:   33 GPLGLSPKKIGEDIAKAT-QDWKGLKVTCKLTIQNRVAKIDVVPSAASLIVKELKEPPRDRKKVKNVKHNGDLTVDTIIKIARIMRPRSMAKKLEGTVKEILGTAQSVGCTIDGQHPHDIIESIANGEIEIP 163          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL12_RAT (60S ribosomal protein L12 OS=Rattus norvegicus GN=Rpl12 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.324e-48
Identity = 92/132 (69.70%), Postives = 111/132 (84.09%), Query Frame = -1
Query:  141 GPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEIP 536
            GPLGLSPKK+G+DIAK T  DWKGLR+TVKLT+QNRQA++ VVPSA+AL+IKALKEP RDRKK KNIKHNGNIT D+++ IA+ MR RS+A++LSGT+KEILGT  SVGC VDG+ P D+  +I  G VE P
Sbjct:   33 GPLGLSPKKVGDDIAKATG-DWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHNGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECP 163          
BLAST of CB304997 vs. ExPASy Swiss-Prot
Match: RL12_MOUSE (60S ribosomal protein L12 OS=Mus musculus GN=Rpl12 PE=1 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 5.030e-48
Identity = 91/132 (68.94%), Postives = 111/132 (84.09%), Query Frame = -1
Query:  141 GPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVAVVPSAAALVIKALKEPERDRKKTKNIKHNGNITLDDVIEIAKVMRPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPRDLQQEITDGDVEIP 536
            GPLGLSPKK+G+DIAK T  DWKGLR+TVKLT+QNRQA++ VVPSA+AL+IKALKEP RDRKK KNIKH+GNIT D+++ IA+ MR RS+A++LSGT+KEILGT  SVGC VDG+ P D+  +I  G VE P
Sbjct:   33 GPLGLSPKKVGDDIAKATG-DWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECP 163          
The following BLAST results are available for this feature:
BLAST of CB304997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
RL12_PRUAR6.539e-6490.3060S ribosomal protein L12 OS=Prunus armeniaca GN=R... [more]
RL123_ARATH3.245e-6388.6460S ribosomal protein L12-3 OS=Arabidopsis thalian... [more]
RL121_ARATH1.233e-6287.8860S ribosomal protein L12-1 OS=Arabidopsis thalian... [more]
RL122_ARATH2.747e-6287.1260S ribosomal protein L12-2 OS=Arabidopsis thalian... [more]
RL12_CHLRE7.247e-5578.7960S ribosomal protein L12 (Fragment) OS=Chlamydomo... [more]
RL12_SCHPO1.511e-5275.0060S ribosomal protein L12 OS=Schizosaccharomyces p... [more]
RL12_CAEEL2.042e-4969.7060S ribosomal protein L12 OS=Caenorhabditis elegan... [more]
RL12_CAEBR2.042e-4969.7060S ribosomal protein L12 OS=Caenorhabditis briggs... [more]
RL12_RAT1.324e-4869.7060S ribosomal protein L12 OS=Rattus norvegicus GN=... [more]
RL12_MOUSE5.030e-4868.9460S ribosomal protein L12 OS=Mus musculus GN=Rpl12... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_D08 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_D08 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304997 ID=CB304997; Name=CB304997; organism=Citrus sinensis; type=EST; length=539bp
TTTTTTTTTTTTTTTTTTTTTTTTTNNNNTACTGTAAAGATCCAAAACTG
ATAATTAAAAAAAAGGCACTGATATATAGAGATAAAAACAAAAATTAAAA
TCTAAAATAGACCCCCTCACAAACAGAGTCTTCAATCAAGAGGAATTTCG
ACATCACCATCAGTGATCTCCTGCTGCAGGTCCCTAGGGTCCTTGCCATC
GACCGTACACCCAACAGAAACGCATGTGCCCAAAATCTCCTTAACGGTGC
CACTCAAATCCTTAGCCATCGACCTGGGCCGCATCACTTTTGCGATTTCG
ATGACGTCATCGAGGGTAATGTTGCCGTTGTGCTTGATGTTCTTGGTCTT
CTTCCTGTCCCTCTCGGGTTCCTTGAGGGCTTTAATCACCAGGGCGGCGG
CGGAGGGAACGACGGCGACCTTGGCCTGACGGTTCTGGACGGTGAGCTTG
ACGGTGACACGTAAGCCCTTCCAGTCCTTGGCGGTTTCCTTGGCGATGTC
CTCTCCGATTTTCTTTGGGGAGAGACCGAGGGGACCGCC
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