CB305020

Overview
NameCB305020
Unique NameCB305020
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length375
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB305020 vs. ExPASy Swiss-Prot
Match: ERD2_PETHY (ER lumen protein retaining receptor OS=Petunia hybrida GN=ERD2 PE=2 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 4.766e-12
Identity = 22/32 (68.75%), Postives = 26/32 (81.25%), Query Frame = -3 
Query:  128 WLSGLAQTALYADFFYYYIKSWKNRELLKLPA 223
            W++GL QT LYADFFYYY +SWKN   L+LPA
Sbjct:  184 WIAGLIQTLLYADFFYYYFQSWKNNTKLELPA 215

HSP 2 Score: 36.5798 bits (83), Expect = 4.766e-12
Identity = 13/21 (61.90%), Postives = 16/21 (76.19%), Query Frame = -2 
Query:  312 ALYILNWVYRFYVEDHKVRWI 374
            + YILNWVYR++ E H V WI
Sbjct:  162 SFYILNWVYRYFTEPHFVHWI 182
[Close]
BLAST of CB305020 vs. ExPASy Swiss-Prot
Match: ERD2_ARATH (ER lumen protein retaining receptor OS=Arabidopsis thaliana GN=ERD2 PE=2 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 4.766e-12
Identity = 24/33 (72.73%), Postives = 25/33 (75.76%), Query Frame = -3 
Query:  128 AWLSGLAQTALYADFFYYYIKSWKNRELLKLPA 226
            A +SGL QTALYADFFYYY  SWK    LKLPA
Sbjct:  183 ACVSGLVQTALYADFFYYYYISWKTNTKLKLPA 215

HSP 2 Score: 39.6614 bits (91), Expect = 4.766e-12
Identity = 13/20 (65.00%), Postives = 17/20 (85.00%), Query Frame = -2 
Query:  312 LYILNWVYRFYVEDHKVRWI 371
            LYI+NW+YR++ EDH  RWI
Sbjct:  163 LYIINWIYRYFTEDHFTRWI 182
The following BLAST results are available for this feature:
BLAST of CB305020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ERD2_PETHY4.766e-1268.75ER lumen protein retaining receptor OS=Petunia hyb... [more]
ERD2_ARATH4.766e-1272.73ER lumen protein retaining receptor OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_H03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_H03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305020 ID=CB305020; Name=CB305020; organism=Citrus sinensis; type=EST; length=375bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTCGACAAACTTACGTGTATTAAA
AGCGAAACTAGAAAATTATAAGTTCTCTGTTATCTTAGAATGCCGTAAAA
CATTTTAACAATGAAAGCTCCAATTCAGGCAGGCAGCTTGAGGAGTTCAC
GGTTCTTCCAGCTCTTAATGTAGTAGTAGAAAAAGTCAGCATAAAGAGCA
GTCTGAGCCAGCCCCGAAAGCCAGGCTGTTTTTTGCACATTGACAAAAAG
ATTCTGTTAGGAAGGAGACCATGAATGCAACAACACCAGCAAAACGGCAG
GAAAACTTACGTATCCAGCGGACTTTGTGATCCTCCACATAGAAACGGTA
AACCCAGTTGAGGATATATAAAGCT
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