CB305021

Overview
NameCB305021
Unique NameCB305021
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length213
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305021 vs. ExPASy Swiss-Prot
Match: RT03_ARATH (Ribosomal protein S3, mitochondrial OS=Arabidopsis thaliana GN=RPS3 PE=2 SV=3)

HSP 1 Score: 105.145 bits (261), Expect = 1.103e-22
Identity = 52/59 (88.14%), Postives = 54/59 (91.53%), Query Frame = -1
Query:   34 NKINFDPVVVLNHFVNPGVADPSTMGGANAQGRSLDKRIRSRIAFFVESLPSEKKCLAE 210
            N+INFDPVVVLNHFV PG A+PSTMG ANAQGRSL KRIRSRIAFFVESL SEKKCLAE
Sbjct:  247 NQINFDPVVVLNHFVAPGAAEPSTMGRANAQGRSLQKRIRSRIAFFVESLTSEKKCLAE 305          
BLAST of CB305021 vs. ExPASy Swiss-Prot
Match: RT03_PETHY (Ribosomal protein S3, mitochondrial OS=Petunia hybrida GN=YRPS3 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.473e-22
Identity = 51/59 (86.44%), Postives = 54/59 (91.53%), Query Frame = -1
Query:   34 NKINFDPVVVLNHFVNPGVADPSTMGGANAQGRSLDKRIRSRIAFFVESLPSEKKCLAE 210
            NKI+FDPVVVLNHFV PGVA+PSTMGGANAQGRSLDKRI S IAFFVE+  SEKKCLAE
Sbjct:  247 NKIHFDPVVVLNHFVAPGVAEPSTMGGANAQGRSLDKRIASCIAFFVENSTSEKKCLAE 305          
BLAST of CB305021 vs. ExPASy Swiss-Prot
Match: RT03_ORYSJ (Ribosomal protein S3, mitochondrial OS=Oryza sativa subsp. japonica GN=RPS3 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.337e-19
Identity = 48/58 (82.76%), Postives = 52/58 (89.66%), Query Frame = -1
Query:   37 NKINFDPVVVLNHFVNPGVADPSTMGGANAQGRSLDKRIRSRIAFFVESLPSEKKCLA 210
            NK++FDPVVVLNHFV PGVA+PSTMGG  A+G SLDKRIRSRIAFFVES  SEKKCLA
Sbjct:  225 NKMHFDPVVVLNHFVAPGVAEPSTMGG--AKGGSLDKRIRSRIAFFVESSTSEKKCLA 280          
BLAST of CB305021 vs. ExPASy Swiss-Prot
Match: RT03_BRANA (Ribosomal protein S3, mitochondrial OS=Brassica napus GN=RPS3 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.337e-19
Identity = 48/60 (80.00%), Postives = 51/60 (85.00%), Query Frame = -1
Query:   34 NKINFDPVVVLNHFVNPGVADPSTMGGANAQG-RSLDKRIRSRIAFFVESLPSEKKCLAE 210
            N++NFDPVVVLNHFV PG A+PSTMG AN  G RSL KRIRSRIAFFVES  SEKKCLAE
Sbjct:  245 NQMNFDPVVVLNHFVAPGAAEPSTMGRANGTGDRSLQKRIRSRIAFFVESSTSEKKCLAE 304          
BLAST of CB305021 vs. ExPASy Swiss-Prot
Match: RT03_OENBE (Ribosomal protein S3, mitochondrial OS=Oenothera bertiana GN=RPS3 PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 5.664e-19
Identity = 46/59 (77.97%), Postives = 52/59 (88.14%), Query Frame = -1
Query:   34 NKINFDPVVVLNHFVNPGVADPSTMGGANAQGRSLDKRIRSRIAFFVESLPSEKKCLAE 210
            N+++FDP+VVLNHFV PGVA+PSTMGGAN QGRS + RIRSRIAFFVES  SEKK LAE
Sbjct:  248 NQMHFDPLVVLNHFVAPGVAEPSTMGGANRQGRSNELRIRSRIAFFVESSTSEKKSLAE 306          
BLAST of CB305021 vs. ExPASy Swiss-Prot
Match: RT03_MAIZE (Ribosomal protein S3, mitochondrial OS=Zea mays GN=RPS3 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.661e-19
Identity = 47/58 (81.03%), Postives = 52/58 (89.66%), Query Frame = -1
Query:   37 NKINFDPVVVLNHFVNPGVADPSTMGGANAQGRSLDKRIRSRIAFFVESLPSEKKCLA 210
            NK++FDPVVVLNHFV PGVA+PSTMGG  A+G SLDKRIRSRIAFFVES  S+KKCLA
Sbjct:  246 NKMHFDPVVVLNHFVAPGVAEPSTMGG--AKGGSLDKRIRSRIAFFVESSTSDKKCLA 301          
The following BLAST results are available for this feature:
BLAST of CB305021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
RT03_ARATH1.103e-2288.14Ribosomal protein S3, mitochondrial OS=Arabidopsis... [more]
RT03_PETHY5.473e-2286.44Ribosomal protein S3, mitochondrial OS=Petunia hyb... [more]
RT03_ORYSJ4.337e-1982.76Ribosomal protein S3, mitochondrial OS=Oryza sativ... [more]
RT03_BRANA4.337e-1980.00Ribosomal protein S3, mitochondrial OS=Brassica na... [more]
RT03_OENBE5.664e-1977.97Ribosomal protein S3, mitochondrial OS=Oenothera b... [more]
RT03_MAIZE9.661e-1981.03Ribosomal protein S3, mitochondrial OS=Zea mays GN... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_H10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_H10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305021 ID=CB305021; Name=CB305021; organism=Citrus sinensis; type=EST; length=213bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAATTCGGCCAAACACTTTT
TCTCGCTGGGCAAGCTTTCTACAAAAAAAGCGATGCGAGAACGTATTCTC
TTATCTAAGCTTCTTCCCTGGGCATTCGCTCCCCCCATCGTGGATGGGTC
AGCCACGCCCGGGTTCACGAAATGATTGAGAACTACGACGGGGTCGAAAT
TGATTTTGTTCCC
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