CB305027

Overview
NameCB305027
Unique NameCB305027
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB305027_ssr184 microsatellite CB305027_ssr184:184..195. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2668 contig Csv1_Contig2668:179..813. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305027 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.266e-36
Identity = 71/113 (62.83%), Postives = 89/113 (78.76%), Query Frame = -2
Query:  248 ALKLVCALRLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 586
            A+ ++CA   C++V AP T A++CGQV+ SLAPCI++L  GG  PP  CC+GV+SLN AA+TTPDRQAAC CLK AY SI G+NA  AA  P +CGVSIPYKISP+TDCS+V+
Sbjct:    5 AMMVLCAGVTCMVVGAPYTEALSCGQVSSSLAPCISYLTKGGAVPPA-CCSGVKSLNSAAKTTPDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSKVQ 116          
BLAST of CB305027 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.285e-36
Identity = 67/114 (58.77%), Postives = 88/114 (77.19%), Query Frame = -2
Query:  248 AALKLVCALRLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 589
            A  KL   + LC++V+ P+  AITCGQV+ +LAPCI ++R GG  PP  CCNG+R++N  ARTTPDRQAACNCLKQ   S+PG+N N AA LP +CGV+IPY+ISP+T+C+ V+
Sbjct:    5 AMTKLALVVALCMVVSVPIAQAITCGQVSSNLAPCIPYVRGGGAVPPA-CCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTNCANVK 117          
BLAST of CB305027 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.829e-35
Identity = 65/114 (57.02%), Postives = 88/114 (77.19%), Query Frame = -2
Query:  248 AALKLVCALRLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 589
            A  KL   + LC++V+ P+  A+TCGQV+ +LAPCIA++R GG  PP  CCNG+R++N  A+TT DRQ ACNCLKQ   S+PG+NAN AA LP +CGV++PYKISP+T+C+ V+
Sbjct:    5 AMTKLALVVALCMVVSVPIAQALTCGQVSSNLAPCIAYVRGGGAVPPA-CCNGIRNINNLAKTTADRQTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTNCATVK 117          
BLAST of CB305027 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.504e-33
Identity = 67/114 (58.77%), Postives = 85/114 (74.56%), Query Frame = -2
Query:  248 AALKLVCALRLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 589
            A  KL   + LC+ V+  V +AITCGQVT SLAPCI ++R+GG  PP  CCNG+R++NG ARTT DRQ ACNCLK    SI G+N N AAGLP +CGV++PYKIS +T+C+ V+
Sbjct:    5 AVTKLALVVALCMAVS--VAHAITCGQVTSSLAPCIGYVRSGGAVPPA-CCNGIRTINGLARTTADRQTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CB305027 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.449e-32
Identity = 65/92 (70.65%), Postives = 75/92 (81.52%), Query Frame = -2
Query:  248 ITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 523
            ITCGQV+ SLAPCI +LR GG   P  CCNGVRSLN AA+TT DRQAACNCLK A+ SI G+N N+AAGLP +CGVS+PYKISP+TDC  V+
Sbjct:    1 ITCGQVSSSLAPCINYLRAGG-VVPANCCNGVRSLNNAAKTTADRQAACNCLKSAFNSIKGLNLNLAAGLPGKCGVSVPYKISPSTDCKSVK 91          
BLAST of CB305027 vs. ExPASy Swiss-Prot
Match: NLTP2_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.216e-32
Identity = 67/115 (58.26%), Postives = 86/115 (74.78%), Query Frame = -2
Query:  248 ALKLVCALRLCILVTAPVTN-AITCGQVTGSLAPCIAFLR-TGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 586
            +LKL C + LC++V AP+   A+T GQVT SLAPCI +LR +G    PP CC G++SLN AA+TTP RQAAC C+K A   I GIN  +A+GLP +CGV+IPYKISP+TDC+ V+
Sbjct:    6 SLKLACVVVLCMVVGAPLAQGAVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 120          
BLAST of CB305027 vs. ExPASy Swiss-Prot
Match: NLTP1_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.216e-32
Identity = 67/115 (58.26%), Postives = 86/115 (74.78%), Query Frame = -2
Query:  248 ALKLVCALRLCILVTAPVTN-AITCGQVTGSLAPCIAFLR-TGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 586
            +LKL C + LC++V AP+   A+T GQVT SLAPCI +LR +G    PP CC G++SLN AA+TTP RQAAC C+K A   I GIN  +A+GLP +CGV+IPYKISP+TDC+ V+
Sbjct:    2 SLKLACVVVLCMVVGAPLAQGAVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 116          
BLAST of CB305027 vs. ExPASy Swiss-Prot
Match: NLTP1_TOBAC (Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.191e-32
Identity = 66/111 (59.46%), Postives = 81/111 (72.97%), Query Frame = -2
Query:  248 KLVCALRLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 580
            K+ C + LC++V AP   AITCGQVT +LAPC+A+LR  G  P   CC GV++L  +ARTT DRQ AC CLK A  +I GIN   AAGLP  CGV+IPYKISP+TDCS+V+
Sbjct:    6 KIACFVVLCMVVAAPCAEAITCGQVTSNLAPCLAYLRNTG--PLGRCCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 114          
BLAST of CB305027 vs. ExPASy Swiss-Prot
Match: NLTP_CICAR (Non-specific lipid-transfer protein OS=Cicer arietinum PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.021e-30
Identity = 66/116 (56.90%), Postives = 86/116 (74.14%), Query Frame = -2
Query:  248 MAALKLVC-ALRLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 592
            MA++K+VC AL +CI++     +AITCG+V  +LAPC+ +L+ GG  P   CC GVR+LN AA TTPDRQAACNCLK A  SI  +NAN AA LP +C V+IPYKIS +T+C+ +R
Sbjct:    1 MASMKVVCVALIMCIVIAPMAESAITCGRVDTALAPCLGYLQ-GGPGPSAQCCGGVRNLNSAAVTTPDRQAACNCLKSAAGSISRLNANNAAALPGKCVVNIPYKISTSTNCATIR 115          
BLAST of CB305027 vs. ExPASy Swiss-Prot
Match: NLTP_BETVU (Non-specific lipid-transfer protein OS=Beta vulgaris GN=IWF1' PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.021e-30
Identity = 62/113 (54.87%), Postives = 77/113 (68.14%), Query Frame = -2
Query:  251 AALKLVCALRLCILVTAPVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 589
            A +K  CAL +C++V AP+  AITCG V   LAPCI +L+ G   P   CC G++SLN AA +  DR+ AC CLK A  SI GIN   AA LPRQCGVS+PY ISPNT+C+ +
Sbjct:    5 AFVKFTCALVMCMMVAAPLAEAITCGLVASKLAPCIGYLQ-GAPGPSAACCGGIKSLNSAAASPADRKTACTCLKSAATSIKGINYGKAASLPRQCGVSVPYAISPNTNCNAI 116          
The following BLAST results are available for this feature:
BLAST of CB305027 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
NLTP_HELAN1.266e-3662.83Non-specific lipid-transfer protein OS=Helianthus ... [more]
NLTP1_PRUDU6.285e-3658.77Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
NLTP_PRUAV1.829e-3557.02Non-specific lipid-transfer protein OS=Prunus aviu... [more]
NLTP_MALDO6.504e-3358.77Non-specific lipid-transfer protein OS=Malus domes... [more]
LTP1_MORNI1.449e-3270.65Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP2_GOSHI4.216e-3258.26Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP1_GOSHI4.216e-3258.26Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP1_TOBAC7.191e-3259.46Non-specific lipid-transfer protein 1 OS=Nicotiana... [more]
NLTP_CICAR3.021e-3056.90Non-specific lipid-transfer protein OS=Cicer ariet... [more]
NLTP_BETVU3.021e-3054.87Non-specific lipid-transfer protein OS=Beta vulgar... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_A08 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_A08 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305027 ID=CB305027; Name=CB305027; organism=Citrus sinensis; type=EST; length=635bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAATACCACAAAATAACTAG
AATTAATCACTCAAAACACAGATCACGTTTACATATTTAATATGATATTA
AAAGCAAAGATACAAACATGACATGAGAGTGAGACTCACACAAGTGGAGA
CTCGTTCGGACAAAGAATTTAACATATATATTCTTTATTTATTTATTCTT
CTCAGTCAATCATACTTGGAAAGTCACAGAGCTCAAACTCAACTTCACCT
GACCCTAGAGCAGTCAGTGTTGGGGCTGATCTTGTAAGGAATGCTGACTC
CACATTGACGAGGAAGGCCAGCGGCAACATTAGCGTTGATGCCGGGGATT
GATCGGTAAGCTTGCTTCAAGCAGTTGCATGCAGCTTGGCGGTCAGGGGT
GGTTCTGGCGGCGCCGTTGAGAGACCTGACGCCGTTACAGCATGGGGGTG
GAGGAAAACGCCCTCCAGTTCTCAAGAAAGCGATGCATGGAGCCAAGGAG
CCTGTCACCTGCCCACATGTTATGGCATTAGTCACTGGGGCAGTCACCAG
AATGCACAAACGCAAAGCACAAACAAGCTTAAGAGCAGCCATGAGAATTT
TTCAGGGAGGCTTTTGCTTGGTTATAGCTAGTTAT
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