CB305036 | Citrus Genome Database

Overview


Name	CB305036
Unique Name	CB305036
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	633

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
CB305036_ssr241	microsatellite	CB305036_ssr241:241..252.	BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6235	contig	Csv1_Contig6235:26..650.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CB305036 vs. ExPASy Swiss-Prot
Match: RS241_ARATH (40S ribosomal protein S24-1 OS=Arabidopsis thaliana GN=RPS24A PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 9.413e-53
Identity = 100/114 (87.72%), Postives = 110/114 (96.49%), Query Frame = -3

Query:  290 AITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAVSVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKKQAKE 631
            A+TIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMY+V+D NA+ VFKFRTHFGGGKS+GFGLIYD+VESAKKFEPKYRLIRNGL TK+EKSRKQ+KERK +AK+
Sbjct:    5 AVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKK 118

HSP 2 Score: 22.7126 bits (47), Expect = 9.413e-53
Identity = 10/13 (76.92%), Postives = 10/13 (76.92%), Query Frame = -1

Query:  277 KRGKNRQKKIRGV 315
            K  KNR KKIRGV
Sbjct:  110 KERKNRAKKIRGV 122

[Close]

BLAST of CB305036 vs. ExPASy Swiss-Prot
Match: RS242_ARATH (40S ribosomal protein S24-2 OS=Arabidopsis thaliana GN=RPS24B PE=2 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 1.450e-50
Identity = 95/114 (83.33%), Postives = 108/114 (94.74%), Query Frame = -3

Query:  290 AITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAVSVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKKQAKE 631
            A+TIRTR FMTNRLL+RKQFVIDVLHPGRANVSKAELKEKLARMY+V+D NA+  FKFRTHFGGGKS+G+GLIYD+VE+AKKFEPKYRLIRNGL TK+EKSRKQ+KERK +AK+
Sbjct:    5 AVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCFKFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKK 118

HSP 2 Score: 22.7126 bits (47), Expect = 1.450e-50
Identity = 10/13 (76.92%), Postives = 10/13 (76.92%), Query Frame = -1

Query:  277 KRGKNRQKKIRGV 315
            K  KNR KKIRGV
Sbjct:  110 KERKNRAKKIRGV 122

[Close]

BLAST of CB305036 vs. ExPASy Swiss-Prot
Match: RS24_DICDI (40S ribosomal protein S24 OS=Dictyostelium discoideum GN=rps24 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.061e-35
Identity = 70/114 (61.40%), Postives = 92/114 (80.70%), Query Frame = -3

Query:  290 AITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAVSVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKKQAKE 631
            A+ +RTRK +TNRLLSRKQFV++V+HPG+ANVSK +LK  +A+++ V D   + +F F+T FGGGKSTGFGLIYD++E AKK+EPKYRL R GL TK + SRKQ KE+K + K+
Sbjct:    5 AVVVRTRKVLTNRLLSRKQFVVEVVHPGKANVSKKDLKTTIAKLHKVADPETIFLFGFKTDFGGGKSTGFGLIYDNLEIAKKYEPKYRLARAGLYTKPQTSRKQRKEKKNRLKK 118

[Close]

BLAST of CB305036 vs. ExPASy Swiss-Prot
Match: RS24_RHIRA (40S ribosomal protein S24 OS=Rhizomucor racemosus GN=RPS24 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.669e-35
Identity = 72/114 (63.16%), Postives = 89/114 (78.07%), Query Frame = -3

Query:  290 AITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAVSVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKKQAKE 631
            A+TIRTRKF+TNRLL RKQ V+DV+HPG ANVSK EL+ K+ +MY   D   VSVF F+THFGGGK+TGF LIYD+VE+ K FEPK+RL+R GLA   +  RKQ KE+K + K+
Sbjct:   23 AVTIRTRKFLTNRLLQRKQMVVDVIHPGLANVSKDELRSKIGKMYKA-DKEVVSVFGFKTHFGGGKTTGFALIYDNVEALKNFEPKHRLVRIGLAEAPKGGRKQRKEKKNREKK 135

HSP 2 Score: 22.3274 bits (46), Expect = 1.669e-35
Identity = 9/13 (69.23%), Postives = 10/13 (76.92%), Query Frame = -1

Query:  277 KRGKNRQKKIRGV 315
            K  KNR+KK RGV
Sbjct:  127 KEKKNREKKFRGV 139

[Close]

BLAST of CB305036 vs. ExPASy Swiss-Prot
Match: RS24_RAT (40S ribosomal protein S24 OS=Rattus norvegicus GN=Rps24 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.677e-35
Identity = 74/113 (65.49%), Postives = 90/113 (79.65%), Query Frame = -3

Query:  290 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAVSVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKKQAKE 628
            +TIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY     + + VF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERK + K+
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTP-DVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKK 116

HSP 2 Score: 21.1718 bits (43), Expect = 1.677e-35
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = -1

Query:  280 KRGKNRQKKIRG 315
            K  KNR KK+RG
Sbjct:  108 KERKNRMKKVRG 119

[Close]

BLAST of CB305036 vs. ExPASy Swiss-Prot
Match: RS24_MOUSE (40S ribosomal protein S24 OS=Mus musculus GN=Rps24 PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.677e-35
Identity = 74/113 (65.49%), Postives = 90/113 (79.65%), Query Frame = -3

Query:  290 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAVSVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKKQAKE 628
            +TIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY     + + VF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERK + K+
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTP-DVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKK 116

HSP 2 Score: 21.1718 bits (43), Expect = 1.677e-35
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = -1

Query:  280 KRGKNRQKKIRG 315
            K  KNR KK+RG
Sbjct:  108 KERKNRMKKVRG 119

[Close]

BLAST of CB305036 vs. ExPASy Swiss-Prot
Match: RS24_MESAU (40S ribosomal protein S24 OS=Mesocricetus auratus GN=RPS24 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.677e-35
Identity = 74/113 (65.49%), Postives = 90/113 (79.65%), Query Frame = -3

Query:  290 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAVSVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKKQAKE 628
            +TIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY     + + VF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERK + K+
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTP-DVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKK 116

HSP 2 Score: 21.1718 bits (43), Expect = 1.677e-35
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = -1

Query:  280 KRGKNRQKKIRG 315
            K  KNR KK+RG
Sbjct:  108 KERKNRMKKVRG 119

[Close]

BLAST of CB305036 vs. ExPASy Swiss-Prot
Match: RS24_HUMAN (40S ribosomal protein S24 OS=Homo sapiens GN=RPS24 PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.677e-35
Identity = 74/113 (65.49%), Postives = 90/113 (79.65%), Query Frame = -3

Query:  290 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAVSVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKKQAKE 628
            +TIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY     + + VF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERK + K+
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTP-DVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKK 116

HSP 2 Score: 21.1718 bits (43), Expect = 1.677e-35
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = -1

Query:  280 KRGKNRQKKIRG 315
            K  KNR KK+RG
Sbjct:  108 KERKNRMKKVRG 119

[Close]

BLAST of CB305036 vs. ExPASy Swiss-Prot
Match: RS24_PONAB (40S ribosomal protein S24 OS=Pongo abelii GN=RPS24 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.679e-35
Identity = 74/113 (65.49%), Postives = 90/113 (79.65%), Query Frame = -3

Query:  290 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAVSVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKKQAKE 628
            +TIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY     + + VF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERK + K+
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTP-DVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKK 116

HSP 2 Score: 21.1718 bits (43), Expect = 1.679e-35
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = -1

Query:  280 KRGKNRQKKIRG 315
            K  KNR KK+RG
Sbjct:  108 KERKNRMKKVRG 119

[Close]

BLAST of CB305036 vs. ExPASy Swiss-Prot
Match: RS24_BOVIN (40S ribosomal protein S24 OS=Bos taurus GN=RPS24 PE=2 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 1.679e-35
Identity = 74/113 (65.49%), Postives = 90/113 (79.65%), Query Frame = -3

Query:  290 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAVSVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKKQAKE 628
            +TIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY     + + VF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERK + K+
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTP-DVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKK 116

HSP 2 Score: 21.1718 bits (43), Expect = 1.679e-35
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = -1

Query:  280 KRGKNRQKKIRG 315
            K  KNR KK+RG
Sbjct:  108 KERKNRMKKVRG 119

The following BLAST results are available for this feature:

BLAST of CB305036 vs. ExPASy Swiss-Prot

BLAST of CB305036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19


Match Name	E-value	Identity	Description
RS241_ARATH	9.413e-53	87.72	40S ribosomal protein S24-1 OS=Arabidopsis thalian...	[more]
RS242_ARATH	1.450e-50	83.33	40S ribosomal protein S24-2 OS=Arabidopsis thalian...	[more]
RS24_DICDI	1.061e-35	61.40	40S ribosomal protein S24 OS=Dictyostelium discoid...	[more]
RS24_RHIRA	1.669e-35	63.16	40S ribosomal protein S24 OS=Rhizomucor racemosus ...	[more]
RS24_RAT	1.677e-35	65.49	40S ribosomal protein S24 OS=Rattus norvegicus GN=...	[more]
RS24_MOUSE	1.677e-35	65.49	40S ribosomal protein S24 OS=Mus musculus GN=Rps24...	[more]
RS24_MESAU	1.677e-35	65.49	40S ribosomal protein S24 OS=Mesocricetus auratus ...	[more]
RS24_HUMAN	1.677e-35	65.49	40S ribosomal protein S24 OS=Homo sapiens GN=RPS24...	[more]
RS24_PONAB	1.679e-35	65.49	40S ribosomal protein S24 OS=Pongo abelii GN=RPS24...	[more]
RS24_BOVIN	1.679e-35	65.49	40S ribosomal protein S24 OS=Bos taurus GN=RPS24 P...	[more]

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Properties


Property Name	Value
Genbank description	FLAVEDO0003_IVaR_B09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_B09 3, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB305036 ID=CB305036; Name=CB305036; organism=Citrus sinensis; type=EST; length=633bp
TTTTTNNTTTTTTTTTTTTTTTTTTTTTTTTATTCAGAGAAAGTACCTCT
TTATTTCACTAAGAAACATTTTTCCCTCCAGGTACTAATATTATAGCAAA
CATCAAATGTAATAATGTCTCATAAAAATACAAAAGAGCTAAGCCACTCG
CTAGTTATTTTAATAACTAAAAGAAAGAGCGAAGGAACTATTCGTGCTGT
TGGAAGAAGCCAAGCCAAGTTTAAACGCCCTAAGGCCTCACTTCTTCTTC
TTGCCAGCTTCAGCCTTGGCCTTCTTGACACCTCTGATCTTCTTTTGCCT
GTTTTTTCCTCTCTTTCATCTGCTTCCTTGACTTCTCAACCTTGGTAGCC
AGTCCATTCCTGATTAGCCTGTACTTGGGCTCAAACTTCTTTGCACTCTC
AACAGAGTCATAGATGAGGCCAAACCCAGTTGATTTCCCACCTCCAAAAT
GTGTACGAAATTTGAACACAGATACAGCATTCGCATCCCTCACATCATAC
ATCCTCGCCAATTTCTCCTTCAACTCGGCCTTTGAAACGTTGGCTCGACC
TGGATGCAGAACATCGATAACAAATTGTTTCCTCGACAGAAGCCTGTTGG
TCATGAACTTTCTGGTTCGGATGGTGATCGCCT