CB305057

Overview
NameCB305057
Unique NameCB305057
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length497
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9028 contig Csv1_Contig9028:208..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305057 vs. ExPASy Swiss-Prot
Match: DYL2_RAT (Dynein light chain 2, cytoplasmic OS=Rattus norvegicus GN=Dynll2 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 6.078e-31
Identity = 59/88 (67.05%), Postives = 73/88 (82.95%), Query Frame = -1
Query:  219 SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 482
            S ++ +IK+ADM ED+Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG NFGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct:    2 SDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89          
BLAST of CB305057 vs. ExPASy Swiss-Prot
Match: DYL2_MOUSE (Dynein light chain 2, cytoplasmic OS=Mus musculus GN=Dynll2 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 6.078e-31
Identity = 59/88 (67.05%), Postives = 73/88 (82.95%), Query Frame = -1
Query:  219 SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 482
            S ++ +IK+ADM ED+Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG NFGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct:    2 SDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89          
BLAST of CB305057 vs. ExPASy Swiss-Prot
Match: DYL2_HUMAN (Dynein light chain 2, cytoplasmic OS=Homo sapiens GN=DYNLL2 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 6.078e-31
Identity = 59/88 (67.05%), Postives = 73/88 (82.95%), Query Frame = -1
Query:  219 SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 482
            S ++ +IK+ADM ED+Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG NFGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct:    2 SDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89          
BLAST of CB305057 vs. ExPASy Swiss-Prot
Match: DYL2_BOVIN (Dynein light chain 2, cytoplasmic OS=Bos taurus GN=DYNLL2 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 6.078e-31
Identity = 59/88 (67.05%), Postives = 73/88 (82.95%), Query Frame = -1
Query:  219 SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 482
            S ++ +IK+ADM ED+Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG NFGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct:    2 SDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89          
BLAST of CB305057 vs. ExPASy Swiss-Prot
Match: DYL1_ANTCR (Dynein light chain LC6, flagellar outer arm OS=Anthocidaris crassispina PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.037e-30
Identity = 60/88 (68.18%), Postives = 73/88 (82.95%), Query Frame = -1
Query:  219 SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 482
            S ++ +IK+ADM ED+Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG NFGSYVTHET HF+YFYL Q AVLLFKSG
Sbjct:    2 SERKAVIKNADMPEDMQQDAVDCATQALEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 89          
BLAST of CB305057 vs. ExPASy Swiss-Prot
Match: DYL1_DROME (Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster GN=ctp PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.768e-30
Identity = 58/88 (65.91%), Postives = 73/88 (82.95%), Query Frame = -1
Query:  219 SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 482
            S ++ +IK+ADM E++Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG NFGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct:    2 SDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 89          
BLAST of CB305057 vs. ExPASy Swiss-Prot
Match: DYL2_DROME (Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster GN=Cdlc2 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.310e-30
Identity = 58/88 (65.91%), Postives = 73/88 (82.95%), Query Frame = -1
Query:  219 SGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 482
            S ++ +IK+ADM E++Q++AVD A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG NFGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct:    2 SDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFKSG 89          
BLAST of CB305057 vs. ExPASy Swiss-Prot
Match: DYL1_CHLRE (Dynein 8 kDa light chain, flagellar outer arm OS=Chlamydomonas reinhardtii PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.017e-30
Identity = 57/91 (62.64%), Postives = 72/91 (79.12%), Query Frame = -1
Query:  219 VSQSGKRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 491
            ++    + +IK+ADM E++Q +AVD A  A EK ++EKD+A  IKK+FD+KH PTWHCIVG NFGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct:    1 MASGSSKAVIKNADMSEEMQADAVDCATQALEKYNIEKDIAAYIKKEFDRKHNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 91          
BLAST of CB305057 vs. ExPASy Swiss-Prot
Match: DYL1_CAEEL (Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans GN=dlc-1 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 3.940e-30
Identity = 56/86 (65.12%), Postives = 72/86 (83.72%), Query Frame = -1
Query:  219 KRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 476
            ++ +IK+ADM +D+Q++A+D A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG NFGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct:    4 RKAVIKNADMSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89          
BLAST of CB305057 vs. ExPASy Swiss-Prot
Match: DYL1_RAT (Dynein light chain 1, cytoplasmic OS=Rattus norvegicus GN=Dynll1 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.497e-29
Identity = 55/86 (63.95%), Postives = 72/86 (83.72%), Query Frame = -1
Query:  219 KRIIIKSADMKEDLQKEAVDIAIAAFEKNSVEKDVAERIKKDFDKKHGPTWHCIVGSNFGSYVTHETNHFVYFYLDQKAVLLFKSG 476
            ++ +IK+ADM E++Q+++V+ A  A EK ++EKD+A  IKK+FDKK+ PTWHCIVG NFGSYVTHET HF+YFYL Q A+LLFKSG
Sbjct:    4 RKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89          
The following BLAST results are available for this feature:
BLAST of CB305057 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
DYL2_RAT6.078e-3167.05Dynein light chain 2, cytoplasmic OS=Rattus norveg... [more]
DYL2_MOUSE6.078e-3167.05Dynein light chain 2, cytoplasmic OS=Mus musculus ... [more]
DYL2_HUMAN6.078e-3167.05Dynein light chain 2, cytoplasmic OS=Homo sapiens ... [more]
DYL2_BOVIN6.078e-3167.05Dynein light chain 2, cytoplasmic OS=Bos taurus GN... [more]
DYL1_ANTCR1.037e-3068.18Dynein light chain LC6, flagellar outer arm OS=Ant... [more]
DYL1_DROME1.768e-3065.91Dynein light chain 1, cytoplasmic OS=Drosophila me... [more]
DYL2_DROME2.310e-3065.91Dynein light chain 2, cytoplasmic OS=Drosophila me... [more]
DYL1_CHLRE3.017e-3062.64Dynein 8 kDa light chain, flagellar outer arm OS=C... [more]
DYL1_CAEEL3.940e-3065.12Dynein light chain 1, cytoplasmic OS=Caenorhabditi... [more]
DYL1_RAT1.497e-2963.95Dynein light chain 1, cytoplasmic OS=Rattus norveg... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_E02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_E02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305057 ID=CB305057; Name=CB305057; organism=Citrus sinensis; type=EST; length=497bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACTAAAAACTGCAGTGCACA
TCCATTTTGAAGTATCAAACCAGTTCCAAGCGAATTCAAATATACAACTT
AGGCTCAAGAATCTCCATGTAAAGATTTCAATTACTACATACAGACAATA
TTTATAGCATTTGGAACGTAAACTCATCATCCGAACCACAATCCACCATC
TTTCTCGACATTAGGCTAACCGGATTTGAATAACAAAACTGCTTTCTGAT
CCAAATAGAAATAAACAAAGTGGTTTGTTTCGTGAGTCACATATGAACCA
AAATTGCTACCGACAATACAGTGCCAAGTAGGTCCATGCTTCTTATCAAA
ATCCTTCTTTATCCTCTCAGCTACATCTTTCTCTACACTGTTCTTCTCAA
ATGCTGCAATAGCAATATCAACAGCCTCCTTTTGCAGGTCCTCTTTCATG
TCGGCGCTCTTAATAATGATTCGTTTTCCAGATTGGGACACTGCCAC
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