CB305060

Overview
NameCB305060
Unique NameCB305060
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length557
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9634 contig Csv1_Contig9634:262..818. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305060 vs. ExPASy Swiss-Prot
Match: RS7_ORYSJ (40S ribosomal protein S7 OS=Oryza sativa subsp. japonica GN=RPS7 PE=2 SV=2)

HSP 1 Score: 231.876 bits (590), Expect = 1.639e-60
Identity = 111/131 (84.73%), Postives = 124/131 (94.66%), Query Frame = -3
Query:  163 AIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPITD 555
            A+++YVPYRLRKAY+KIH RLVRELEKKFSGKDVVL+ATRRIVRPPKKGSAV RPR+RTLTAVHD +LEDVVYPAEIVGKRVRY LDG KI+KIFLDPKERNNTEYKL++FS VYR+L GKDVVFDYP+T+
Sbjct:   60 AVIIYVPYRLRKAYKKIHVRLVRELEKKFSGKDVVLVATRRIVRPPKKGSAVVRPRTRTLTAVHDGILEDVVYPAEIVGKRVRYHLDGRKIMKIFLDPKERNNTEYKLDTFSSVYRRLCGKDVVFDYPMTE 190          
BLAST of CB305060 vs. ExPASy Swiss-Prot
Match: RS7_AVIMR (40S ribosomal protein S7 OS=Avicennia marina GN=RPS7 PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 8.133e-60
Identity = 109/131 (83.21%), Postives = 128/131 (97.71%), Query Frame = -3
Query:  163 AIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPITD 555
            A+V++VPYRLRK++RKIH RLVRELEKKFSGK+VVLIATRRI+RPPKKGSAVQRPRSRTLTAVHDAMLED+VYPAEIVGKRVRYRLDGSKI+K+FLDPK +N+TE KLE+F+GVYRKL+GKDVVF++P+T+
Sbjct:   60 AVVIHVPYRLRKSFRKIHPRLVRELEKKFSGKEVVLIATRRILRPPKKGSAVQRPRSRTLTAVHDAMLEDIVYPAEIVGKRVRYRLDGSKIMKVFLDPKAKNDTENKLETFAGVYRKLSGKDVVFEFPLTE 190          
BLAST of CB305060 vs. ExPASy Swiss-Prot
Match: RS71_ARATH (40S ribosomal protein S7-1 OS=Arabidopsis thaliana GN=RPS7A PE=2 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 3.090e-59
Identity = 110/132 (83.33%), Postives = 126/132 (95.45%), Query Frame = -3
Query:  160 AIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPITDA 555
            AIVV VPYRLRKAYRKIH RLVRELEKKFSGKDV+LIATRRIVRPPKKGSA +RPR+RTLT+VH+A+L+DVV PAEIVGKR RYRLDG+KI+K+FLDPKERNNTEYK+E+FS VY+KLTGKDVVF++PIT+A
Sbjct:   60 AIVVNVPYRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIVRPPKKGSAAKRPRNRTLTSVHEAILDDVVLPAEIVGKRTRYRLDGTKIMKVFLDPKERNNTEYKVEAFSAVYKKLTGKDVVFEFPITEA 191          
BLAST of CB305060 vs. ExPASy Swiss-Prot
Match: RS7_BRAOL (40S ribosomal protein S7 OS=Brassica oleracea GN=RPS7 PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 4.036e-59
Identity = 105/131 (80.15%), Postives = 124/131 (94.66%), Query Frame = -3
Query:  163 AIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPITD 555
            A+V+YVP+RLRKA+RKIHSRLVRELEKKFSG DV+ +ATRRI+RPPKKGSAVQRPR+RTLT+VH+AMLEDV YPAEIVGKR RYR+DG+KI+K++L+PKERNNTEYKLE+  GVYRKLTGKDVVF+YP+ D
Sbjct:   60 AVVIYVPFRLRKAFRKIHSRLVRELEKKFSGNDVIFVATRRIMRPPKKGSAVQRPRNRTLTSVHEAMLEDVAYPAEIVGKRTRYRVDGTKIMKVYLEPKERNNTEYKLETMVGVYRKLTGKDVVFEYPVAD 190          
BLAST of CB305060 vs. ExPASy Swiss-Prot
Match: RS7_SECCE (40S ribosomal protein S7 OS=Secale cereale GN=RPS7 PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 2.003e-58
Identity = 107/131 (81.68%), Postives = 123/131 (93.89%), Query Frame = -3
Query:  163 AIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPITD 555
            A+V++VPYRLRK +RKIH RLVRELEKKFSGKDVV++ATRRIVRPPKKGSAV RPR+RTLTAVHD +LEDVVYPAEIVGKRVRYRLDGSKIIKIFLDP ERNNTEYKL++F+ VYR+L GKDVV++YP+ +
Sbjct:   60 AVVIHVPYRLRKNFRKIHVRLVRELEKKFSGKDVVIVATRRIVRPPKKGSAVVRPRTRTLTAVHDGLLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPMERNNTEYKLDTFTAVYRRLCGKDVVYEYPVAE 190          
BLAST of CB305060 vs. ExPASy Swiss-Prot
Match: RS73_ARATH (40S ribosomal protein S7-3 OS=Arabidopsis thaliana GN=RPS7C PE=2 SV=2)

HSP 1 Score: 221.476 bits (563), Expect = 2.215e-57
Identity = 103/129 (79.84%), Postives = 121/129 (93.80%), Query Frame = -3
Query:  169 AIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPI 555
            A+V+YVP+RLRKA+RKIH RLVRELEKKFSGKDV+ + TRRI+RPPKKG+AVQRPR+RTLT+VH+AMLEDV +PAEIVGKR RYRLDGSKI+K+FLD KE+NNTEYKLE+  GVYRKLTGKDVVF+YP+
Sbjct:   60 AVVIYVPFRLRKAFRKIHPRLVRELEKKFSGKDVIFVTTRRIMRPPKKGAAVQRPRNRTLTSVHEAMLEDVAFPAEIVGKRTRYRLDGSKIMKVFLDAKEKNNTEYKLETMVGVYRKLTGKDVVFEYPV 188          
BLAST of CB305060 vs. ExPASy Swiss-Prot
Match: RS72_ARATH (40S ribosomal protein S7-2 OS=Arabidopsis thaliana GN=RPS7B PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 2.893e-57
Identity = 104/132 (78.79%), Postives = 123/132 (93.18%), Query Frame = -3
Query:  160 AIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPITDA 555
            A+V+YVP+RLRKA+RKIH RLVRELEKKFSGKDV+ +ATRRI+RPPKKGSAVQRPR+RTLT+VH+AMLEDV YPAEIVGKR RYRLDG+KI+K+FLD K +N+TEYKLE+  GVYRKLTGKDVVF+YP+ +A
Sbjct:   60 AVVIYVPFRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAVQRPRNRTLTSVHEAMLEDVAYPAEIVGKRTRYRLDGTKIMKVFLDSKLKNDTEYKLETMVGVYRKLTGKDVVFEYPVIEA 191          
BLAST of CB305060 vs. ExPASy Swiss-Prot
Match: RS7_HORVU (40S ribosomal protein S7 OS=Hordeum vulgare GN=RPS7 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 8.416e-57
Identity = 106/131 (80.92%), Postives = 122/131 (93.13%), Query Frame = -3
Query:  163 AIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPITD 555
            A+V++VPYRLRK +RKIH RLVRELE+  SGKDVV +ATRRIVRPPKKGSAVQRPR+RTLTAVHD +LEDVVYPAEIVGKRVRYRLDG+K+IKI+LDPKERNNTEYKLE+FS VYR+L GKDVVF+YP+ +
Sbjct:   60 AVVIHVPYRLRKPFRKIHVRLVRELER-VSGKDVVFVATRRIVRPPKKGSAVQRPRTRTLTAVHDGILEDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFSAVYRRLCGKDVVFEYPVAE 189          
BLAST of CB305060 vs. ExPASy Swiss-Prot
Match: RS7_XENLA (40S ribosomal protein S7 OS=Xenopus laevis GN=rps7 PE=2 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 4.957e-41
Identity = 82/132 (62.12%), Postives = 108/132 (81.82%), Query Frame = -3
Query:  172 AIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQ----RPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 555
            AI+++VP    K+++KI  RLVRELEKKFSGK VV IA RRI+  P + S  +    RPRSRTLTAVHDA+LED+VYP+EIVG+R+R +LDGS++IK+ LD  ++NN E+K+E+FSGVY+KLTGKDVVF++P
Sbjct:   59 AIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVYPSEIVGRRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVVFEFP 190          
BLAST of CB305060 vs. ExPASy Swiss-Prot
Match: RS7_ICTPU (40S ribosomal protein S7 OS=Ictalurus punctatus GN=rps7 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.104e-40
Identity = 82/132 (62.12%), Postives = 107/132 (81.06%), Query Frame = -3
Query:  172 AIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQ----RPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 555
            AI+++VP    KA++KI  RLVRELEKKFSGK VV IA RRI+  P + S  +    RPRSRTLTAVHDA+LED+VYP+EIVGKR+R +LD S++IK+ LD  ++NN E+K+E+F+GVY+KLTGKDVVF++P
Sbjct:   59 AIIIFVPVPQLKAFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVYPSEIVGKRIRVKLDSSRLIKVHLDKAQQNNVEHKVETFAGVYKKLTGKDVVFEFP 190          
The following BLAST results are available for this feature:
BLAST of CB305060 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
RS7_ORYSJ1.639e-6084.7340S ribosomal protein S7 OS=Oryza sativa subsp. ja... [more]
RS7_AVIMR8.133e-6083.2140S ribosomal protein S7 OS=Avicennia marina GN=RP... [more]
RS71_ARATH3.090e-5983.3340S ribosomal protein S7-1 OS=Arabidopsis thaliana... [more]
RS7_BRAOL4.036e-5980.1540S ribosomal protein S7 OS=Brassica oleracea GN=R... [more]
RS7_SECCE2.003e-5881.6840S ribosomal protein S7 OS=Secale cereale GN=RPS7... [more]
RS73_ARATH2.215e-5779.8440S ribosomal protein S7-3 OS=Arabidopsis thaliana... [more]
RS72_ARATH2.893e-5778.7940S ribosomal protein S7-2 OS=Arabidopsis thaliana... [more]
RS7_HORVU8.416e-5780.9240S ribosomal protein S7 OS=Hordeum vulgare GN=RPS... [more]
RS7_XENLA4.957e-4162.1240S ribosomal protein S7 OS=Xenopus laevis GN=rps7... [more]
RS7_ICTPU1.104e-4062.1240S ribosomal protein S7 OS=Ictalurus punctatus GN... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_E05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_E05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305060 ID=CB305060; Name=CB305060; organism=Citrus sinensis; type=EST; length=557bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTATGCAAAATGATGTCA
TACCAAATTTAAGAGTCAAAATTTTAAATAGTACCCTATCCAAATCAAAA
TTATAGTGCAACAAAATAAACAGTGACAAACACAAATGATCATCTGCAAC
AACTCTTCAGGCATCTGTAATTGGATAATCAAAAACCACGTCTTTGCCGG
TAAGCTTTCTGTAAACCCCTGAAAAAGACTCCAACTTGTACTCCGTGTTG
TTCCTCTCCTTTGGATCCAAGAAAATCTTGATTATTTTGGATCCATCGAG
ACGGTATCTGACACGTTTTCCAACAATCTCAGCTGGGTAAACTACATCTT
CAAGCATGGCATCATGAACAGCTGTGAGTGTGCGACTGCGAGGTCTCTGA
ACAGCAGAGCCTTTCTTTGGTGGCCTGACTATCCTTCGGGTGGCAATGAG
TACAACATCCTTGCCACTGAATTTCTTCTCCAGCTCTCTCACAAGGCGAG
AATGTATCTTCCGATAAGCCTTCCTCAATCTGTAAGGCACATAGACAACA
ATTGCCT
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