CB305063

Overview
NameCB305063
Unique NameCB305063
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length593
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305063 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.302e-45
Identity = 87/149 (58.39%), Postives = 106/149 (71.14%), Query Frame = -3
Query:  160 AAFFAHVTHETTDFCYIEEKNK--ADPHCT---SPQYPCANGKFYYGRGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMTYVHSVLNQGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 591
            AAFFAH++HETT+ C+IEE++    D +C    + QYPCA GK YYGRGP+QL+ N NY  AG+AIGFDGL +PE VA D   SFK A+WFWMT VHSV+NQGF  T + ING  EC G+N+DQ  DR++ Y  YC  FGV PG  L C
Sbjct:  140 AAFFAHISHETTNLCHIEERDGDVGDAYCDQDKAAQYPCAAGKKYYGRGPLQLSWNYNYALAGQAIGFDGLGNPEKVATDVNTSFKAAMWFWMTNVHSVMNQGFGATTKAINGALECNGQNQDQANDRIQFYKKYCADFGVAPGDNLTC 288          
BLAST of CB305063 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 7.144e-44
Identity = 86/147 (58.50%), Postives = 102/147 (69.39%), Query Frame = -3
Query:  160 AAFFAHVTHETTDFCYIEEKNKAD-PHC--TSPQYPCANGKFYYGRGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMTYVHSVLNQGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 591
            AAFFAHVTHET   CYI E N A+  +C  ++ Q+PC  GK YYGRGP+Q++ N NY  AG+ IGFDGL  P+ VA+D  ISFKTALWFWM  VH V++QGF  TIR ING  EC G+N   V  RV  Y DYC++FGV PG  L C
Sbjct:  139 AAFFAHVTHETGHMCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNYGPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWMNNVHQVMSQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVSPGGNLYC 285          
BLAST of CB305063 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 9.330e-44
Identity = 87/147 (59.18%), Postives = 100/147 (68.03%), Query Frame = -3
Query:  160 AAFFAHVTHETTDFCYIEEKNKAD-PHC--TSPQYPCANGKFYYGRGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMTYVHSVLNQGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 591
            AAFFAHVTHET   CYI E N A   +C   + Q+PC  GK YYGRGP+Q++ N NY  AG+ IGFDGL  P+ VA+D  ISFKTALWFWM  VH V+ QGF  TIR ING  EC G+N   V  RV  Y DYC++FGVDPG  L C
Sbjct:  142 AAFFAHVTHETGHMCYINEINGASMDYCDKNNKQWPCQPGKKYYGRGPLQISWNYNYGPAGQNIGFDGLRDPDRVAQDPTISFKTALWFWMNNVHQVMLQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVDPGGNLYC 288          
BLAST of CB305063 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.219e-43
Identity = 84/146 (57.53%), Postives = 99/146 (67.81%), Query Frame = -3
Query:  160 AAFFAHVTHETTDFCYIEEKNKADPHC--TSPQYPCANGKFYYGRGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMTYVHSVLNQGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 591
            AAFFAH THET  FCYI E NK++ +C  T  Q+PCA G+ YYGRGP+Q++ N NY  AGRAIGFDGL  P  VARD V++FK ALWFWM  VH V+ QGF  T R +    ECGG N  Q+  RV  Y  YC++ GVDPG  L C
Sbjct:  124 AAFFAHATHETGHFCYISEINKSNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNYGPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMNSVHGVVPQGFGATTRAMQRALECGGNNPAQMNARVGYYRQYCRQLGVDPGPNLTC 269          
BLAST of CB305063 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.079e-43
Identity = 85/146 (58.22%), Postives = 102/146 (69.86%), Query Frame = -3
Query:  160 AAFFAHVTHETTDFCYIEEKNKADPHC--TSPQYPCANGKFYYGRGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMTYVHSVLNQGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 591
            AAFFAHVTHET  FCYI E NK++ +C  ++ Q+PCA G+ YYGRGP+Q++ N NY  AGR IGF+GL  P  VA+D VI+FKTALWFWM  VH V+ QGF  TIR ING  EC G N  Q+  RV  Y  YC++  VDPG  L C
Sbjct:  135 AAFFAHVTHETGHFCYISEINKSNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWMNNVHGVMPQGFGATIRAINGALECNGNNPAQMNARVGYYKQYCQQLRVDPGPNLIC 280          
BLAST of CB305063 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 5.660e-41
Identity = 84/151 (55.63%), Postives = 100/151 (66.23%), Query Frame = -3
Query:  160 AAFFAHVTHETTDFCYIEE-----KNKADPHCTSPQYPCANGKFYYGRGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMTYVHS--VLNQGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 591
            AAFFAH  HET  FCYIEE     KN  D   TS Q+PC  GK YYGRGP+Q++ N NY  AG++IGFDGL  P+ VAR  V++F+TALW+W   VH   V  QGF  TIR ING  EC G+N   V +RV  Y  +C++FGVDPGS L C
Sbjct:  123 AAFFAHANHETIKFCYIEEIDGPSKNYCDE--TSTQWPCMAGKGYYGRGPLQISWNFNYGPAGQSIGFDGLGDPDAVARSPVLAFQTALWYWTNNVHDAFVSGQGFGATIRAINGALECDGKNPTAVSNRVAYYQQFCQQFGVDPGSNLTC 271          
BLAST of CB305063 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.809e-40
Identity = 83/148 (56.08%), Postives = 98/148 (66.22%), Query Frame = -3
Query:  160 AAFFAHVTHETTDFCYIEEKNKADP-HCTSP---QYPCANGKFYYGRGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMTYVHSVLNQGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 591
            AA FAH THET  FCYIEE + A   +C      QYPC++ K Y+GRGPIQL+ N NY  AG A  FDGL +PETV+ D V+SFKTALW+WM +V  V+NQGF  TIR ING  EC G N   V  RV  YT+YC++ GV  G  L C
Sbjct:  123 AAAFAHFTHETGHFCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNYGPAGSANNFDGLGAPETVSNDVVVSFKTALWYWMQHVRPVINQGFGATIRAINGALECDGANPTTVQARVNYYTEYCRQLGVATGDNLTC 270          
BLAST of CB305063 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 8.174e-40
Identity = 82/150 (54.67%), Postives = 102/150 (68.00%), Query Frame = -3
Query:  160 AAFFAHVTHETTDFCYIEEKN-KADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFW----MTYVHSVLNQGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 591
            AA+FAHVTHET   CYIEE++  A+ +C  S QYPC   K Y+GRGP+QL+ N NYI+AG+ + FDGLN P+ V RD +ISFKT+LWFW    + YV    NQGF  TIR ING  EC G N  Q++ RV  Y +YC + GV PG+ L C
Sbjct:  101 AAYFAHVTHETGHLCYIEERDGHANNYCQESQQYPCNPNKEYFGRGPMQLSWNYNYIDAGKELHFDGLNDPDIVGRDPIISFKTSLWFWIRKGVQYVILDPNQGFGATIRIINGGQECDGHNTAQMMARVGYYQEYCAQLGVSPGNNLPC 250          
BLAST of CB305063 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 8.458e-37
Identity = 78/147 (53.06%), Postives = 93/147 (63.27%), Query Frame = -3
Query:  160 AAFFAHVTHETTDFCYIEEKNKAD-PHC--TSPQYPCANGKFYYGRGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMTYVHSVLNQGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 591
            A  FAH THET  FCYIEE N A   +C   + QYPCA GK Y+GRGPIQL+ N NY   G+++  + L  PE V+ +  ++F+T LWFWM  V  VLNQGF  TIR ING  EC G N   V  R+R Y DYC + GVDPG  L C
Sbjct:  123 ATMFAHFTHETGHFCYIEEINGASRDYCDENNRQYPCAPGKGYFGRGPIQLSWNYNYGACGQSLNLNLLGQPELVSSNPTVAFRTGLWFWMNSVRPVLNQGFGATIRAING-MECNGGNSGAVNARIRYYRDYCGQLGVDPGPNLSC 268          
BLAST of CB305063 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 1.001e-29
Identity = 74/179 (41.34%), Postives = 95/179 (53.07%), Query Frame = -3
Query:  160 AAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSVLN---------------QGFSETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGSRLEC 591
            AAFF   +HETT              +C+ +E+N A  +C  S  +PCA+GK YYGRGP+QL+ N NY   GRAIG D LN+P+ VA D VI+FK A+WFWMT        H+V+                 G+      ING  ECG     +V DR+  Y  YC  FGV+PG  L+C
Sbjct:  142 AAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPASDYCEPSATWPCASGKRYYGRGPMQLSWNYNYGLCGRAIGVDLLNNPDLVANDAVIAFKAAIWFWMTAQPPKPSCHAVIAGQWQPSDADRAAGRLPGYGVITNIINGGLECGRGQDGRVADRIGFYQRYCNIFGVNPGGNLDC 320          
The following BLAST results are available for this feature:
BLAST of CB305063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHIP_BETVU1.302e-4558.39Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHI4_ORYSJ7.144e-4458.50Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI5_ORYSJ9.330e-4459.18Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIB_MAIZE1.219e-4357.53Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHIA_MAIZE2.079e-4358.22Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHI6_ORYSJ5.660e-4155.63Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_PHAVU2.809e-4056.08Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHIT_DIOJA8.174e-4054.67Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHI4_BRANA8.458e-3753.06Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHIB_ARATH1.001e-2941.34Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_E10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_E10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305063 ID=CB305063; Name=CB305063; organism=Citrus sinensis; type=EST; length=593bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGATCAGGTACAAGAAAAT
TATTCCGTCAGAGTTACCAAACAGAGAAAGTTGTTTGAAATAACTCTGGC
TTATTGTGATACAATATAATACATATACTGTAATATTTTTTGTACAAAAT
ATCTATTCAGCATTCAAGACGTGATCCAGGATCAACACCAAATCTTTTGC
AATAATCAGTGTAACGCCTAACACGATCCAGAACTTGGTCGCGGTTTCGG
CCACCGCATTCAGCAGGACCATTAATTTTCCGAATTGTTTCACTAAAACC
TTGGTTTAGTACTGAGTGCACATATGTCATCCAAAACCACAAAGCAGTCT
TGAAAGATATGACACGGTCCCTGGCTACTGTTTCCGGAGAGTTCAGACCG
TCGAAACCGATGGCCCTTCCCGCCTCTATGTAGTTTCCATTTCCGGTGAG
CTGAATCGGTCCCCGGCCGTAGTAGAATTTACCATTGGCACATGGGTATT
GTGGAGATGTACAATGAGGATCTGCTTTATTCTTCTCTTCTATGTAGCAA
AAATCTGTTGTTTCATGAGTGACATGGGCAAAAAATGCCGCAA
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