CB305068

Overview
NameCB305068
Unique NameCB305068
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length647
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13130 contig Csv1_Contig13130:876..1522. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: ALEU_ARATH (Thiol protease aleurain OS=Arabidopsis thaliana GN=ALEU PE=1 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 6.078e-58
Identity = 103/120 (85.83%), Postives = 113/120 (94.17%), Query Frame = -2
Query:  287 KFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVVA 646
            KFS+ENVGVQVL+SVNITLGAEDEL+HAVGLVRPVS+AFEV+  FR YKSGVY+ + CG+TPMDVNHAV+AVGYGVEDGVPYWLIKNSWG +WGD GYFKMEMGKNMCGIATCASYPVVA
Sbjct:  239 KFSAENVGVQVLNSVNITLGAEDELKHAVGLVRPVSIAFEVIHSFRLYKSGVYTDSHCGSTPMDVNHAVLAVGYGVEDGVPYWLIKNSWGADWGDKGYFKMEMGKNMCGIATCASYPVVA 358          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CYSP2_MAIZE (Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.310e-57
Identity = 102/120 (85.00%), Postives = 111/120 (92.50%), Query Frame = -2
Query:  287 KFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVVA 646
            KF +ENVGV+VLDSVNITLGAEDEL+ AVGLVRPVSVAFEV+ GFR YKSGVY+S  CG TPMDVNHAV+AVGYGVEDGVPYWLIKNSWG +WGD GYFKMEMGKNMCG+ATCASYP+VA
Sbjct:  241 KFKNENVGVKVLDSVNITLGAEDELKDAVGLVRPVSVAFEVITGFRLYKSGVYTSDHCGTTPMDVNHAVLAVGYGVEDGVPYWLIKNSWGADWGDEGYFKMEMGKNMCGVATCASYPIVA 360          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: ALEUL_ARATH (Thiol protease aleurain-like OS=Arabidopsis thaliana GN=At3g45310 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.146e-56
Identity = 101/120 (84.17%), Postives = 111/120 (92.50%), Query Frame = -2
Query:  287 KFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVVA 646
            KFS++N+GVQV DSVNITLGAEDEL+HAVGLVRPVSVAFEVV  FRFYK GV++S  CGNTPMDVNHAV+AVGYGVED VPYWLIKNSWG  WGD+GYFKMEMGKNMCG+ATC+SYPVVA
Sbjct:  239 KFSAKNIGVQVRDSVNITLGAEDELKHAVGLVRPVSVAFEVVHEFRFYKKGVFTSNTCGNTPMDVNHAVLAVGYGVEDDVPYWLIKNSWGGEWGDNGYFKMEMGKNMCGVATCSSYPVVA 358          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: ORYC_ORYSJ (Oryzain gamma chain OS=Oryza sativa subsp. japonica GN=Os09g0442300 PE=2 SV=2)

HSP 1 Score: 215.698 bits (548), Expect = 1.655e-55
Identity = 98/119 (82.35%), Postives = 112/119 (94.12%), Query Frame = -2
Query:  287 FSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVVA 643
            +  ENVGV+VLDSVNITLGAEDEL++AVGLVRPVSVAF+V++GFR YKSGVY+S  CG +PMDVNHAV+AVGYGVE+GVPYWLIKNSWG +WGD+GYFKMEMGKNMCGIATCASYP+VA
Sbjct:  244 YKPENVGVKVLDSVNITLGAEDELKNAVGLVRPVSVAFQVINGFRMYKSGVYTSDHCGTSPMDVNHAVLAVGYGVENGVPYWLIKNSWGADWGDNGYFKMEMGKNMCGIATCASYPIVA 362          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: ALEU_HORVU (Thiol protease aleurain OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.549e-53
Identity = 97/119 (81.51%), Postives = 108/119 (90.76%), Query Frame = -2
Query:  287 FSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVVA 643
            + +EN  VQVLDSVNITL AEDEL++AVGLVRPVSVAF+V+DGFR YKSGVY+S  CG TP DVNHAV+AVGYGVE+GVPYWLIKNSWG +WGD+GYFKMEMGKNMC IATCASYPVVA
Sbjct:  243 YKAENAAVQVLDSVNITLNAEDELKNAVGLVRPVSVAFQVIDGFRQYKSGVYTSDHCGTTPDDVNHAVLAVGYGVENGVPYWLIKNSWGADWGDNGYFKMEMGKNMCAIATCASYPVVA 361          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CYSP3_SOLLC (Cysteine proteinase 3 OS=Solanum lycopersicum GN=CYP-3 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.023e-53
Identity = 95/120 (79.17%), Postives = 110/120 (91.67%), Query Frame = -2
Query:  287 KFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPVVA 646
            KFS  N+GV+V+ SVNITLGAE EL++AV LVRPVSVAFEVV GF+ YKSGVY+ST+CG+TPMDVNHAV+AVGYGVE+G PYWLIKNSWG +WG+ GYFKMEMGKNMCG+ATCASYP+VA
Sbjct:  237 KFSQANIGVKVISSVNITLGAEYELKYAVALVRPVSVAFEVVKGFKQYKSGVYASTECGDTPMDVNHAVLAVGYGVENGTPYWLIKNSWGADWGEDGYFKMEMGKNMCGVATCASYPIVA 356          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CATH_RAT (Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.540e-36
Identity = 69/118 (58.47%), Postives = 84/118 (71.19%), Query Frame = -2
Query:  293 KFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPV 646
            KF+ E     V + VNITL  E  +  AV L  PVS AFEV + F  YKSGVYSS  C  TP  VNHAV+AVGYG ++G+ YW++KNSWG NWG++GYF +E GKNMCG+A CASYP+
Sbjct:  213 KFNPEKAVAFVKNVVNITLNDEAAMVEAVALYNPVSFAFEVTEDFMMYKSGVYSSNSCHKTPDKVNHAVLAVGYGEQNGLLYWIVKNSWGSNWGNNGYFLIERGKNMCGLAACASYPI 330          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CATH_PIG (Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.903e-35
Identity = 66/118 (55.93%), Postives = 82/118 (69.49%), Query Frame = -2
Query:  293 KFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPV 646
            KF  +     V D  NIT+  E+ +  AV L  PVS AFEV + F  Y+ G+YSST C  TP  VNHAV+AVGYG E+G+PYW++KNSWG  WG +GYF +E GKNMCG+A CASYP+
Sbjct:  215 KFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEENGIPYWIVKNSWGPQWGMNGYFLIERGKNMCGLAACASYPI 332          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CATH_BOVIN (Cathepsin H OS=Bos taurus GN=CTSH PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.104e-34
Identity = 65/108 (60.19%), Postives = 77/108 (71.30%), Query Frame = -2
Query:  293 VLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPV 616
            V D  NITL  E+ +  AV L  PVS AFEV   F  Y+ G+YSST C  TP  VNHAV+AVGYG E G+PYW++KNSWG NWG  GYF +E GKNMCG+A CAS+P+
Sbjct:  225 VKDVANITLNDEEAMVEAVALHNPVSFAFEVTADFMMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEEKGIPYWIVKNSWGPNWGMKGYFLIERGKNMCGLAACASFPI 332          
BLAST of CB305068 vs. ExPASy Swiss-Prot
Match: CATH_MOUSE (Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.747e-34
Identity = 66/118 (55.93%), Postives = 83/118 (70.34%), Query Frame = -2
Query:  293 KFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNTPMDVNHAVVAVGYGVEDGVPYWLIKNSWGENWGDHGYFKMEMGKNMCGIATCASYPV 646
            +F+ +     V + VNITL  E  +  AV L  PVS AFEV + F  YKSGVYSS  C  TP  VNHAV+AVGYG ++G+ YW++KNSWG  WG++GYF +E GKNMCG+A CASYP+
Sbjct:  213 RFNPQKAVAFVKNVVNITLNDEAAMVEAVALYNPVSFAFEVTEDFLMYKSGVYSSKSCHKTPDKVNHAVLAVGYGEQNGLLYWIVKNSWGSQWGENGYFLIERGKNMCGLAACASYPI 330          
The following BLAST results are available for this feature:
BLAST of CB305068 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
ALEU_ARATH6.078e-5885.83Thiol protease aleurain OS=Arabidopsis thaliana GN... [more]
CYSP2_MAIZE2.310e-5785.00Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=... [more]
ALEUL_ARATH1.146e-5684.17Thiol protease aleurain-like OS=Arabidopsis thalia... [more]
ORYC_ORYSJ1.655e-5582.35Oryzain gamma chain OS=Oryza sativa subsp. japonic... [more]
ALEU_HORVU1.549e-5381.51Thiol protease aleurain OS=Hordeum vulgare PE=2 SV... [more]
CYSP3_SOLLC2.023e-5379.17Cysteine proteinase 3 OS=Solanum lycopersicum GN=C... [more]
CATH_RAT8.540e-3658.47Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1[more]
CATH_PIG1.903e-3555.93Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1[more]
CATH_BOVIN2.104e-3460.19Cathepsin H OS=Bos taurus GN=CTSH PE=2 SV=1[more]
CATH_MOUSE2.747e-3455.93Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_F06 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_F06 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305068 ID=CB305068; Name=CB305068; organism=Citrus sinensis; type=EST; length=647bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGCATTGACAAAATATATAT
AACATCGGTGGTGTCCTAGTCACAATGACTGTTTACATGGACATAGATCT
CAGAATTTATTTTGAACATCAAGCAGCCATGCATTGCTATTGTAGATTAT
ATGGACATTAATCTCCGAATTTATTTTGTACATAAAGCCAACCATTCTGC
TATCATGCTTGAGTGAAATAATATAAGTTTTATGAGCAAATGACTTGCTG
ATAGCCAGATCCAACTATTTCTTCAGGAGCAGACTAAGCCACAACTGGGT
ATGATGCACAAGTTGCAATACCACACATGTTCTTCCCCATCTCCATCTTA
AAGTAGCCATGATCGCCCCAGTTCTCTCCCCAAGAGTTCTTAATCAGCCA
ATATGGAACACCATCTTCAACTCCGTACCCAACAGCAACGACAGCATGGT
TCACATCCATGGGAGTATTTCCACATTTAGTGCTGCTGTAAACTCCACTC
TTGTAAAATCGGAATCCATCTACTACTTCAAATGCCACACTCACAGGTCG
AACAAGACCAACTGCATGCTGTAATTCATCTTCAGCACCCAAGGTAATGT
TGACTGAGTCCAGGACTTGGACGCCAACATTTTCAGATGAGAATTTG
back to top