CB305071

Overview
NameCB305071
Unique NameCB305071
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length593
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3781 contig Csv1_Contig3781:271..863. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305071 vs. ExPASy Swiss-Prot
Match: PTR5_ARATH (Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.303e-34
Identity = 74/184 (40.22%), Postives = 105/184 (57.07%), Query Frame = -3
Query:   40 GRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHN 591
            GRY T+    V    GM +L+++A++  L  P C  +   A  G T    A  F  L L+ +G GGI+PC  +FGADQF+   E  K+  +SFFNW+YF      MI+ +V+V++Q +V W WGLG+P   M ++   FF GS  Y   KP GSPL   +QV VA+ +K  +K+PE+  L   N
Sbjct:   95 GRYWTIASFVVIYIAGMTLLTISASVPGL-TPTCSGETCHATAGQT----AITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGSPLTRMLQVIVASCRKSKVKIPEDESLLYEN 273          
BLAST of CB305071 vs. ExPASy Swiss-Prot
Match: PTR1_ARATH (Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.008e-34
Identity = 73/177 (41.24%), Postives = 105/177 (59.32%), Query Frame = -3
Query:   61 GRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEE 591
            GRY T+         GM +L+L+A++  L P   GN ++  C  P   Q A  F  L ++ +G GGI+PC  +FGADQF+ N E+ K   +SFFNW+YF+     +I+ TV+V++Q +V W WG G+P   M ++   FF GSR Y   +P GSPL    QV VAA +K  +K+PE+
Sbjct:   94 GRYWTIATFVFIYVSGMTLLTLSASVPGLKP---GNCNADTCH-PNSSQTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRIFQVIVAAFRKISVKVPED 266          
BLAST of CB305071 vs. ExPASy Swiss-Prot
Match: PTR2_ARATH (Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.131e-34
Identity = 73/180 (40.56%), Postives = 104/180 (57.78%), Query Frame = -3
Query:   52 GRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWL 591
            GRY T+   S   F+GM  L+L+A++  L P +C       CP  TP Q A  F GL L+ +G GGI+PC  +FGADQF+      +    SFFNW+YF+     ++S +++V++Q +  W  G GIP   M L+ A FF G+ LY   KP GSP+    QV VA+ +K  +K+PE+  L
Sbjct:  111 GRYWTIACFSGIYFIGMSALTLSASVPALKPAECIGD---FCPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFFNWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGSPITRISQVVVASFRKSSVKVPEDATL 287          
BLAST of CB305071 vs. ExPASy Swiss-Prot
Match: PTR2X_ARATH (Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.493e-33
Identity = 75/178 (42.13%), Postives = 106/178 (59.55%), Query Frame = -3
Query:   64 GRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGA-CPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQF-NPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPE 591
            GR+ T+  AS++SFLGM++L LTA + ++ P  C    +G+ C   T  QLA L++   L+ IG+GGIRPC+LAFGADQ  N      ++ + SFF WYY +   A++I+ T IVY+Q  + W  G G+PA +M ++  +F L S LY       S      Q  VAA KKR L LP+
Sbjct:   91 GRFLTISIASLSSFLGMVLLWLTAMLPQVKPSPCDPTAAGSHCGSSTASQLALLYSAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLESFFGWYYASSAVAVLIAFTGIVYIQEHLGWKIGFGVPAVLMLIAALLFILASPLYVTRGVTKSLFTGLAQAIVAAYKKRKLSLPD 268          
BLAST of CB305071 vs. ExPASy Swiss-Prot
Match: CHL1_ARATH (Nitrate/chlorate transporter OS=Arabidopsis thaliana GN=CHL1 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.652e-27
Identity = 63/178 (35.39%), Postives = 94/178 (52.81%), Query Frame = -3
Query:   58 GRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEP 591
            GRY T+   +     G+ +L+L+  I  L PP C    S  C   +  QL  L+  L L  +G GG++     FG+DQF+      +  +T FFN ++F      ++++TV+VYVQ DV   WG GI AF + L+ ++F  G+  Y   K  GSP+     V VAA + R L+LP +P
Sbjct:   97 GRYLTIAIFAAIQATGVSILTLSTIIPGLRPPRCNPTTSSHCEQASGIQLTVLYLALYLTALGTGGVKASVSGFGSDQFDETEPKERSKMTYFFNRFFFCINVGSLLAVTVLVYVQDDVGRKWGYGICAFAIVLALSVFLAGTNRYRFKKLIGSPMTQVAAVIVAAWRNRKLELPADP 274          
BLAST of CB305071 vs. ExPASy Swiss-Prot
Match: PTR3A_ARATH (Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.354e-26
Identity = 64/187 (34.22%), Postives = 95/187 (50.80%), Query Frame = -3
Query:   31 GRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIP 591
            GRY T   +    F GM+VL+L+  I  + PP+C   +   C   +  QLA  F  L  + IG GG +P     GADQF+      K    SFFNW+ F+  F  + + TV+VYVQ +V W  G G+P   + +S  +F LG+  Y    P GSP     +V VA+ +K +  +  +  +T  + +P
Sbjct:   97 GRYITFVISCAIYFSGMMVLTLSVTIPGIKPPECSTTNVENCEKASVLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDVFDPKEKTQKLSFFNWWMFSIFFGTLFANTVLVYVQDNVGWTLGYGLPTLGLAISITIFLLGTPFYRHKLPTGSPFTKMARVIVASFRKANAPMTHD--ITSFHELP 281          
BLAST of CB305071 vs. ExPASy Swiss-Prot
Match: PTR3B_ARATH (Peptide transporter PTR3-B OS=Arabidopsis thaliana GN=PTR3-B PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.938e-26
Identity = 64/169 (37.87%), Postives = 88/169 (52.07%), Query Frame = -3
Query:   85 GRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKK 591
            GRY T   +S    LGM +L+L+ ++  L PP C   +   C   +  QLA  F  L  + IG GG +P     GADQF+      K    SFFNW+ F+  F    + TV+VYVQ +V WA G G+    +  S  +F LG+RLY    P GSP     +V VA+++K
Sbjct:   97 GRYITFVISSAIYLLGMALLTLSVSLPGLKPPKCSTANVENCEKASVIQLAVFFGALYTLAIGTGGTKPNISTIGADQFDEFDPKDKIHKHSFFNWWMFSIFFGTFFATTVLVYVQDNVGWAIGYGLSTLGLAFSIFIFLLGTRLYRHKLPMGSPFTKMARVIVASLRK 265          
BLAST of CB305071 vs. ExPASy Swiss-Prot
Match: S15A1_RABIT (Solute carrier family 15 member 1 OS=Oryctolagus cuniculus GN=SLC15A1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.658e-16
Identity = 55/178 (30.90%), Postives = 87/178 (48.88%), Query Frame = -3
Query:   82 GRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMIS--LTVIVYVQ------SDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKR 591
            G++KT+ + S+   +G  V SL++        +  + +    P   P  +A    GL L+ +G GGI+PC  AFG DQF    E  +     FF+ +Y       ++S  +T +V VQ          +    GIPA +M +S  +F +GS +Y K KP+G+ L+  V+    AIK R
Sbjct:   79 GKFKTIVWLSIVYTIGQAVTSLSSV------NELTDNNHDGTPDSLPVHVAVCMIGLLLIALGTGGIKPCVSAFGGDQFEEGQEKQR---NRFFSIFYLAINAGSLLSTIITPMVRVQQCGIHVKQACYPLAFGIPAILMAVSLIVFIIGSGMYKKFKPQGNILSKVVKCICFAIKNR 247          
BLAST of CB305071 vs. ExPASy Swiss-Prot
Match: S15A1_RAT (Solute carrier family 15 member 1 OS=Rattus norvegicus GN=Slc15a1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.404e-15
Identity = 52/178 (29.21%), Postives = 85/178 (47.75%), Query Frame = -3
Query:   82 GRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMIS--LTVIVYVQ------SDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKR 591
            G++KT+   S+   +G  V+S+++        D  + D    P   P  +A    GL L+ +G GGI+PC  AFG DQF    E  +     FF+ +Y       ++S  +T I+ VQ          +    G+PA +M ++  +F LGS +Y K +P+G+ +    +    AIK R
Sbjct:   79 GKFKTIVSLSIVYTIGQAVISVSSI------NDLTDHDHDGSPNNLPLHVALSMIGLALIALGTGGIKPCVSAFGGDQFEEGQEKQR---NRFFSIFYLAINAGSLLSTIITPILRVQQCGIHSQQACYPLAFGVPAALMAVALIVFVLGSGMYKKFQPQGNIMGKVAKCIRFAIKNR 247          
BLAST of CB305071 vs. ExPASy Swiss-Prot
Match: S15A1_MOUSE (Solute carrier family 15 member 1 OS=Mus musculus GN=Slc15a1 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.404e-15
Identity = 52/178 (29.21%), Postives = 85/178 (47.75%), Query Frame = -3
Query:   82 GRYKTLGFASVASFLGMLVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMIS--LTVIVYVQ------SDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKR 591
            G++KT+   S+   +G  V+S+++        D  + D    P   P  +A    GL L+ +G GGI+PC  AFG DQF    E  +     FF+ +Y       ++S  +T I+ VQ          +    G+PA +M ++  +F LGS +Y K +P+G+ +    +    AIK R
Sbjct:   79 GKFKTIVSLSIVYTIGQAVISVSSI------NDLTDHDHNGSPDSLPVHVALSMVGLALIALGTGGIKPCVSAFGGDQFEEGQEKQR---NRFFSIFYLAINGGSLLSTIITPILRVQQCGIHSQQACYPLAFGVPAALMAVALIVFVLGSGMYKKFQPQGNIMGKVAKCIGFAIKNR 247          
The following BLAST results are available for this feature:
BLAST of CB305071 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
PTR5_ARATH2.303e-3440.22Peptide transporter PTR5 OS=Arabidopsis thaliana G... [more]
PTR1_ARATH3.008e-3441.24Peptide transporter PTR1 OS=Arabidopsis thaliana G... [more]
PTR2_ARATH5.131e-3440.56Peptide transporter PTR2 OS=Arabidopsis thaliana G... [more]
PTR2X_ARATH1.493e-3342.13Probable peptide transporter At1g52190 OS=Arabidop... [more]
CHL1_ARATH4.652e-2735.39Nitrate/chlorate transporter OS=Arabidopsis thalia... [more]
PTR3A_ARATH1.354e-2634.22Peptide transporter PTR3-A OS=Arabidopsis thaliana... [more]
PTR3B_ARATH3.938e-2637.87Peptide transporter PTR3-B OS=Arabidopsis thaliana... [more]
S15A1_RABIT1.658e-1630.90Solute carrier family 15 member 1 OS=Oryctolagus c... [more]
S15A1_RAT1.404e-1529.21Solute carrier family 15 member 1 OS=Rattus norveg... [more]
S15A1_MOUSE1.404e-1529.21Solute carrier family 15 member 1 OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_F09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_F09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305071 ID=CB305071; Name=CB305071; organism=Citrus sinensis; type=EST; length=593bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGGAATATGGTTATGAAGGG
TGAGCCACGGTTCCTCTGGTAACTTCAAGTGCCTCTTCTTGATTGCGGCC
ACAAAGACCTGCACCGTACTAGCCAATGGACTGCCCTCTGGTTTTACTTT
CGCATAAAGTCTAGATCCCAGGAAGAACATTGCACAGGATAAGAACATCA
TAAATGCAGGGATTCCCAATCCCCAGGCCCAGCTCACATCCGATTGCACG
TAAACAATGACTGTCAAAGATATCATCATCGCGAAGGTGAAGGTGAAGTA
GTACCAATTGAAGAAGCTGGTGATTCCCTGCTTCCCAGATTCAGTATTGG
GATTAAATTGGTCAGCACCAAAGGCCAAGTTACATGGCCTAATGCCGCCA
GCTCCAATTACCATCAGTCCTAGCCCAGTGAACAGAAAAGCCAGTTGCCA
TGGTGTTGGCCCAGGGCACGCTCCAGAATCTTGATTTCCACAATCAGGTG
GGTGCAGTTTTGAGATTGCTGCTGTCAAAGAAAGTACAAGCATCCCCAGA
AAAGAGGCAACAGAAGCGAATCCCAGAGTCTTGTACCGGCCAA
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