CB305106

Overview
NameCB305106
Unique NameCB305106
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length529
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305106 vs. ExPASy Swiss-Prot
Match: Y5621_ARATH (PHD finger protein At5g26210 OS=Arabidopsis thaliana GN=At5g26210 PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 1.300e-24
Identity = 47/58 (81.03%), Postives = 52/58 (89.66%), Query Frame = -2
Query:  331 QGAT-CGACGDNYGTDEFWICCDICEKWFPGKCVKITPAKAEHIKQYKCPSCSSKRAR 501
            QG T CGACG++Y  DEFWICCD+CE WF GKCVKITPA+AEHIKQYKCPSCS+KRAR
Sbjct:  197 QGETQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKRAR 254          
The following BLAST results are available for this feature:
BLAST of CB305106 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5621_ARATH1.300e-2481.03PHD finger protein At5g26210 OS=Arabidopsis thalia... [more]
back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IaR_C03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IaR_C03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305106 ID=CB305106; Name=CB305106; organism=Citrus sinensis; type=EST; length=529bp
TTTTTTTTTTTTTTTTTTTTNNTTTTTTTTCCTTCAACAAAGGACATAGT
CATAAAATAAAAAGAGCCTTTTGTCAATGATGCTTACACATTCACAACAA
GAACTTTAAATCAAACCACCAAAAAACTTGCTCCAACATTTGCATTTCTA
AATGCCAGCAGCTATTTCAAAACACAAATTCCAAAAAAAATTAAACAGGA
GTTGCAAATTCATTGACTAAAACAGGTATCTGACTCTGTTTTACTCTCAA
ACTGTAACGAAAAAAGTTCTAATCTTGTCTTGCTTTGTTCAATCGTTGTT
CAATCCCCAACTTCATAACTGATCTTAAACTCTAGCCCTCTTGCTACTGC
AGCTGGGGCACTTGTACTGCTTGATGTGCTCGGCCTTCGCAGGTGTAATC
TTTACACATTTGCCGGGGAACCATTTCTCACAAATATCGCAGCAGATCCA
GAATTCGTCAGTGCCATAGTTATCCCCGCATGCTCCACAGGTGGCGCCCT
GTTCATCATCTTCCTCTTCTTCATCCCCC
back to top