CB305108

Overview
NameCB305108
Unique NameCB305108
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length492
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305108 vs. ExPASy Swiss-Prot
Match: R27A2_ARATH (60S ribosomal protein L27a-2 OS=Arabidopsis thaliana GN=RPL27AB PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 3.657e-49
Identity = 91/104 (87.50%), Postives = 100/104 (96.15%), Query Frame = -3
Query:  179 ILFDKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 490
            ILFDKYHPG+FGKVGMRYFHKLRNKF CPIVN+DKLWS+VP+DVKAK+SKDNVP+IDVTQ G+FKVLGKG LPEN+P VVKAKL+SKTAEKKIKEAGGAVVLTA
Sbjct:   43 ILFDKYHPGYFGKVGMRYFHKLRNKFFCPIVNLDKLWSLVPEDVKAKSSKDNVPLIDVTQHGFFKVLGKGHLPENKPFVVKAKLISKTAEKKIKEAGGAVVLTA 146          
BLAST of CB305108 vs. ExPASy Swiss-Prot
Match: R27A3_ARATH (60S ribosomal protein L27a-3 OS=Arabidopsis thaliana GN=RPL27AC PE=2 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 8.146e-49
Identity = 90/104 (86.54%), Postives = 100/104 (96.15%), Query Frame = -3
Query:  179 ILFDKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 490
            ILFDKYHPG+FGKVGMRYFHKLRNKF CPIVN+DKLWS+VP+DVKAK++KDNVP+IDVTQ G+FKVLGKG LPEN+P VVKAKL+SKTAEKKIKEAGGAVVLTA
Sbjct:   43 ILFDKYHPGYFGKVGMRYFHKLRNKFFCPIVNLDKLWSLVPEDVKAKSTKDNVPLIDVTQHGFFKVLGKGHLPENKPFVVKAKLISKTAEKKIKEAGGAVVLTA 146          
BLAST of CB305108 vs. ExPASy Swiss-Prot
Match: RL27A_DICDI (60S ribosomal protein L27a OS=Dictyostelium discoideum GN=rpl27a PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.543e-31
Identity = 61/107 (57.01%), Postives = 83/107 (77.57%), Query Frame = -3
Query:  179 ILFDKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 490
            I FDKYHPG+FGK+GMR+FH LRN++HCP V+++K+W++VP+ V+   +  N    P++DVTQ G+FKVLG G+LP  QP++VKA+  SK AEKKIK  GGA +L A
Sbjct:   43 INFDKYHPGYFGKLGMRHFHLLRNQYHCPTVSLEKIWTLVPESVRKSLAAKNDGTAPVVDVTQKGFFKVLGHGILP-TQPIIVKARYFSKVAEKKIKAVGGACILVA 148          
BLAST of CB305108 vs. ExPASy Swiss-Prot
Match: RL27A_TETTH (60S ribosomal protein L27a OS=Tetrahymena thermophila GN=RPL27A PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 7.660e-31
Identity = 66/106 (62.26%), Postives = 82/106 (77.36%), Query Frame = -3
Query:  179 ILFDKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKD--NVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 490
            IL +K+HPG++GK+GMR FH  +N  HCP+VNIDKLWS+V    + K ++D   VP+IDVT+ G+FKVLGKG LP NQPVVVKAK  SKTAE++I   GGA VLTA
Sbjct:   45 ILMEKWHPGYYGKLGMRTFHLKKNPLHCPVVNIDKLWSLVSDATRQKYAEDKKKVPVIDVTKAGFFKVLGKGRLP-NQPVVVKAKYFSKTAERRIVAVGGACVLTA 149          
BLAST of CB305108 vs. ExPASy Swiss-Prot
Match: RL27A_OSCBR (60S ribosomal protein L27a OS=Oscheius brevesophaga GN=rpl-27a PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.706e-30
Identity = 60/101 (59.41%), Postives = 77/101 (76.24%), Query Frame = -3
Query:  179 DKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDNVPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 481
            DKYHPG+FGKVGMR FH  +N  +CP VN+D+LW++VP++ K K S +  P+ID  + GYFKVLGKG+LP+ QP++VKAK  S  AE KIK AGGA +L A
Sbjct:   46 DKYHPGYFGKVGMRVFHLNKNHHYCPTVNVDRLWALVPEEQKTKVSAEKAPVIDCVKAGYFKVLGKGLLPK-QPLIVKAKFFSHEAENKIKAAGGACILVA 145          
BLAST of CB305108 vs. ExPASy Swiss-Prot
Match: RL27A_RAT (60S ribosomal protein L27a OS=Rattus norvegicus GN=Rpl27a PE=1 SV=3)

HSP 1 Score: 127.487 bits (319), Expect = 3.218e-29
Identity = 62/107 (57.94%), Postives = 80/107 (74.77%), Query Frame = -3
Query:  179 ILFDKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 490
            I FDKYHPG+FGKVGMR++H  RN+  CP VN+DKLW++V +  +  A+K+     P+IDV + GY+KVLGKG LP+ QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct:   43 INFDKYHPGYFGKVGMRHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKNGVAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148          
BLAST of CB305108 vs. ExPASy Swiss-Prot
Match: RL27A_MACFA (60S ribosomal protein L27a OS=Macaca fascicularis GN=RPL27A PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 3.218e-29
Identity = 62/107 (57.94%), Postives = 80/107 (74.77%), Query Frame = -3
Query:  179 ILFDKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 490
            I FDKYHPG+FGKVGMR++H  RN+  CP VN+DKLW++V +  +  A+K+     P+IDV + GY+KVLGKG LP+ QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct:   43 INFDKYHPGYFGKVGMRHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148          
BLAST of CB305108 vs. ExPASy Swiss-Prot
Match: RL27A_BOVIN (60S ribosomal protein L27a OS=Bos taurus GN=RPL27A PE=2 SV=3)

HSP 1 Score: 127.487 bits (319), Expect = 3.218e-29
Identity = 62/107 (57.94%), Postives = 80/107 (74.77%), Query Frame = -3
Query:  179 ILFDKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 490
            I FDKYHPG+FGKVGMR++H  RN+  CP VN+DKLW++V +  +  A+K+     P+IDV + GY+KVLGKG LP+ QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct:   43 INFDKYHPGYFGKVGMRHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148          
BLAST of CB305108 vs. ExPASy Swiss-Prot
Match: RL27A_PONAB (60S ribosomal protein L27a OS=Pongo abelii GN=RPL27A PE=2 SV=3)

HSP 1 Score: 127.102 bits (318), Expect = 4.203e-29
Identity = 61/107 (57.01%), Postives = 80/107 (74.77%), Query Frame = -3
Query:  179 ILFDKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 490
            I FDKYHPG+FGKVGM+++H  RN+  CP VN+DKLW++V +  +  A+K+     P+IDV + GY+KVLGKG LP+ QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct:   43 INFDKYHPGYFGKVGMKHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEEKIKSVGGACVLVA 148          
BLAST of CB305108 vs. ExPASy Swiss-Prot
Match: RL27A_HUMAN (60S ribosomal protein L27a OS=Homo sapiens GN=RPL27A PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 4.203e-29
Identity = 61/107 (57.01%), Postives = 80/107 (74.77%), Query Frame = -3
Query:  179 ILFDKYHPGFFGKVGMRYFHKLRNKFHCPIVNIDKLWSMVPQDVKAKASKDN---VPMIDVTQFGYFKVLGKGVLPENQPVVVKAKLVSKTAEKKIKEAGGAVVLTA 490
            I FDKYHPG+FGKVGM+++H  RN+  CP VN+DKLW++V +  +  A+K+     P+IDV + GY+KVLGKG LP+ QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct:   43 INFDKYHPGYFGKVGMKHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK-QPVIVKAKFFSRRAEEKIKSVGGACVLVA 148          
The following BLAST results are available for this feature:
BLAST of CB305108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
R27A2_ARATH3.657e-4987.5060S ribosomal protein L27a-2 OS=Arabidopsis thalia... [more]
R27A3_ARATH8.146e-4986.5460S ribosomal protein L27a-3 OS=Arabidopsis thalia... [more]
RL27A_DICDI1.543e-3157.0160S ribosomal protein L27a OS=Dictyostelium discoi... [more]
RL27A_TETTH7.660e-3162.2660S ribosomal protein L27a OS=Tetrahymena thermoph... [more]
RL27A_OSCBR1.706e-3059.4160S ribosomal protein L27a OS=Oscheius brevesophag... [more]
RL27A_RAT3.218e-2957.9460S ribosomal protein L27a OS=Rattus norvegicus GN... [more]
RL27A_MACFA3.218e-2957.9460S ribosomal protein L27a OS=Macaca fascicularis ... [more]
RL27A_BOVIN3.218e-2957.9460S ribosomal protein L27a OS=Bos taurus GN=RPL27A... [more]
RL27A_PONAB4.203e-2957.0160S ribosomal protein L27a OS=Pongo abelii GN=RPL2... [more]
RL27A_HUMAN4.203e-2957.0160S ribosomal protein L27a OS=Homo sapiens GN=RPL2... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IaR_C07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IaR_C07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305108 ID=CB305108; Name=CB305108; organism=Citrus sinensis; type=EST; length=492bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATAAAATGAGATTCAGGTC
ACATTTAATCATTAAGCGAGAGATATACCCAAAAAAAAAGATAAAAACAT
TGTGATTTAAATAAGTCTCAACAGATCCCAGAATAAAACAAAACCCCTAG
ACAAGGGAGAGTTACCAAAATAACCCTAAGCTGTGAGCACAACAGCGCCA
CCAGCCTCTTTGATCTTCTTCTCAGCGGTCTTAGAAACGAGCTTGGCCTT
GACAACGACGGGCTGGTTCTCCGGCAAAACACCTTTGCCCAAAACCTTAA
AGTAGCCGAACTGAGTGACATCAATCATCGGAACATTGTCCTTGCTGGCC
TTTGCTTTCACATCTTGCGGGACCATGGACCAGAGCTTGTCGATGTTGAC
GATGGGGCAGTGGAATTTGTTGCGGAGTTTGTGGAAGTACCTCATACCGA
CTTTACCAAAAAAACCAGGATGGTACTTGTCGAAAAGGATTC
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