CB305122

Overview
NameCB305122
Unique NameCB305122
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length555
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7745 contig Csv1_Contig7745:83..637. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305122 vs. ExPASy Swiss-Prot
Match: RL373_ARATH (60S ribosomal protein L37-3 OS=Arabidopsis thaliana GN=RPL37C PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.195e-41
Identity = 76/83 (91.57%), Postives = 82/83 (98.80%), Query Frame = -2
Query:  297 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTPGTGRMRYLRHVPRRFKSGFREGTQ 545
            MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRC+ACAYPAARKRTYNWSVKAIRRKT GTGRMRYLR+VPRRFK+GFREGT+
Sbjct:    1 MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTGFREGTE 83          
BLAST of CB305122 vs. ExPASy Swiss-Prot
Match: RL371_ARATH (60S ribosomal protein L37-1 OS=Arabidopsis thaliana GN=RPL37A PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.090e-40
Identity = 76/83 (91.57%), Postives = 81/83 (97.59%), Query Frame = -2
Query:  297 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTPGTGRMRYLRHVPRRFKSGFREGTQ 545
            MGKGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRC+ACAYPAARKRTYNWSVKAIRRKT GTGRMRYLR+VPRRFK+ FREGTQ
Sbjct:    1 MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTCFREGTQ 83          
BLAST of CB305122 vs. ExPASy Swiss-Prot
Match: RL372_ARATH (60S ribosomal protein L37-2 OS=Arabidopsis thaliana GN=RPL37B PE=2 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 1.858e-40
Identity = 75/83 (90.36%), Postives = 81/83 (97.59%), Query Frame = -2
Query:  297 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTPGTGRMRYLRHVPRRFKSGFREGTQ 545
            M KGTGSFGKRRNK+HTLCVRCGRRSFH+QKSRC+ACAYPAARKRTYNWSVKAIRRKT GTGRMRYLR+VPRRFK+GFREGT+
Sbjct:    1 MTKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTGFREGTE 83          
BLAST of CB305122 vs. ExPASy Swiss-Prot
Match: RL371_DROME (Probable 60S ribosomal protein L37-A OS=Drosophila melanogaster GN=RpL37a PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.588e-31
Identity = 61/83 (73.49%), Postives = 70/83 (84.34%), Query Frame = -2
Query:  297 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTPGTGRMRYLRHVPRRFKSGFREGTQ 545
            M KGT SFGKR NKTHTLC RCGR S+H+QKS CA C YPAA+ R+YNWSVKA RRKT GTGRM++L+ V RRF++GFREGTQ
Sbjct:    1 MTKGTSSFGKRHNKTHTLCRRCGRSSYHIQKSTCAQCGYPAAKLRSYNWSVKAKRRKTTGTGRMQHLKVVRRRFRNGFREGTQ 83          
BLAST of CB305122 vs. ExPASy Swiss-Prot
Match: RL37A_YEAST (60S ribosomal protein L37-A OS=Saccharomyces cerevisiae GN=RPL37A PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.022e-30
Identity = 58/82 (70.73%), Postives = 68/82 (82.93%), Query Frame = -2
Query:  300 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTPGTGRMRYLRHVPRRFKSGFREGT 545
            MGKGT SFGKR NK+HTLC RCGRRSFH+QK  C++C YPAA+ R+YNW  KA RR T GTGRMRYL+HV RRFK+GF+ G+
Sbjct:    1 MGKGTPSFGKRHNKSHTLCNRCGRRSFHVQKKTCSSCGYPAAKTRSYNWGAKAKRRHTTGTGRMRYLKHVSRRFKNGFQTGS 82          
BLAST of CB305122 vs. ExPASy Swiss-Prot
Match: RL37_SPOFR (60S ribosomal protein L37 OS=Spodoptera frugiperda GN=RpL37 PE=3 SV=3)

HSP 1 Score: 131.724 bits (330), Expect = 2.277e-30
Identity = 59/81 (72.84%), Postives = 70/81 (86.42%), Query Frame = -2
Query:  303 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTPGTGRMRYLRHVPRRFKSGFREG 545
            M KGT SFGKRRNKTHTLC RCGR S+H+QKS+CA C YPAA+ R+Y+WSVKA RRKT GTGRMR+L+ V RRF++GF+EG
Sbjct:    1 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAKRRKTTGTGRMRHLKIVRRRFRNGFKEG 81          
BLAST of CB305122 vs. ExPASy Swiss-Prot
Match: RL37B_YEAST (60S ribosomal protein L37-B OS=Saccharomyces cerevisiae GN=RPL37B PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 6.625e-30
Identity = 56/82 (68.29%), Postives = 69/82 (84.15%), Query Frame = -2
Query:  300 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTPGTGRMRYLRHVPRRFKSGFREGT 545
            MGKGT SFGKR NK+HTLC RCGRRSFH+QK  C++C YP+A+ R++NW+ KA RR T GTGRMRYL+HV RRFK+GF+ G+
Sbjct:    1 MGKGTPSFGKRHNKSHTLCNRCGRRSFHVQKKTCSSCGYPSAKTRSHNWAAKAKRRHTTGTGRMRYLKHVSRRFKNGFQTGS 82          
BLAST of CB305122 vs. ExPASy Swiss-Prot
Match: RL37_RAT (60S ribosomal protein L37 OS=Rattus norvegicus GN=Rpl37 PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 1.476e-29
Identity = 59/82 (71.95%), Postives = 65/82 (79.27%), Query Frame = -2
Query:  300 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTPGTGRMRYLRHVPRRFKSGFREGT 545
            M KGT SFGKRRNKTHTLC RCG +++HLQKS C  C YPA RKR YNWS KA RR T GTGRMR+L+ V RRF+ GFREGT
Sbjct:    1 MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIVYRRFRHGFREGT 82          
BLAST of CB305122 vs. ExPASy Swiss-Prot
Match: RL37_MOUSE (60S ribosomal protein L37 OS=Mus musculus GN=Rpl37 PE=2 SV=3)

HSP 1 Score: 129.028 bits (323), Expect = 1.476e-29
Identity = 59/82 (71.95%), Postives = 65/82 (79.27%), Query Frame = -2
Query:  300 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTPGTGRMRYLRHVPRRFKSGFREGT 545
            M KGT SFGKRRNKTHTLC RCG +++HLQKS C  C YPA RKR YNWS KA RR T GTGRMR+L+ V RRF+ GFREGT
Sbjct:    1 MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIVYRRFRHGFREGT 82          
BLAST of CB305122 vs. ExPASy Swiss-Prot
Match: RL37_HUMAN (60S ribosomal protein L37 OS=Homo sapiens GN=RPL37 PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 1.476e-29
Identity = 59/82 (71.95%), Postives = 65/82 (79.27%), Query Frame = -2
Query:  300 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAYPAARKRTYNWSVKAIRRKTPGTGRMRYLRHVPRRFKSGFREGT 545
            M KGT SFGKRRNKTHTLC RCG +++HLQKS C  C YPA RKR YNWS KA RR T GTGRMR+L+ V RRF+ GFREGT
Sbjct:    1 MTKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRNTTGTGRMRHLKIVYRRFRHGFREGT 82          
The following BLAST results are available for this feature:
BLAST of CB305122 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL373_ARATH2.195e-4191.5760S ribosomal protein L37-3 OS=Arabidopsis thalian... [more]
RL371_ARATH1.090e-4091.5760S ribosomal protein L37-1 OS=Arabidopsis thalian... [more]
RL372_ARATH1.858e-4090.3660S ribosomal protein L37-2 OS=Arabidopsis thalian... [more]
RL371_DROME4.588e-3173.49Probable 60S ribosomal protein L37-A OS=Drosophila... [more]
RL37A_YEAST1.022e-3070.7360S ribosomal protein L37-A OS=Saccharomyces cerev... [more]
RL37_SPOFR2.277e-3072.8460S ribosomal protein L37 OS=Spodoptera frugiperda... [more]
RL37B_YEAST6.625e-3068.2960S ribosomal protein L37-B OS=Saccharomyces cerev... [more]
RL37_RAT1.476e-2971.9560S ribosomal protein L37 OS=Rattus norvegicus GN=... [more]
RL37_MOUSE1.476e-2971.9560S ribosomal protein L37 OS=Mus musculus GN=Rpl37... [more]
RL37_HUMAN1.476e-2971.9560S ribosomal protein L37 OS=Homo sapiens GN=RPL37... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IaR_E04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IaR_E04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305122 ID=CB305122; Name=CB305122; organism=Citrus sinensis; type=EST; length=555bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGTCAAAACATGAAGTAAT
TAAGGGAGGTCAAACAACAATAAACTCATTCATCTTGTCCAAAATTGAAA
AAGACTACATAGTAATCATAATTGAAAACAACTAAGCACAAAAACAAATA
ACATCCTTTTTCAAAATTATGTTCCCATGAATCTTGTCTCCACACATTAA
AGAAGACTAAATCTATAATGAGGTGCTGATTCACGCCCAAAATTACCCTT
CAACTCCTTAAGCAGAGGCAGCTGCTCCCTTCTTCCTTGGTGCTGCCTGA
GTACCTTCTCTGAAGCCGCTCTTGAACCTGCGAGGGACATGGCGCAGATA
CCTCATCCTGCCGGTTCCAGGGGTCTTTCTTCGGATTGCCTTCACACTCC
AGTTATACGTTCTCTTGCGAGCAGCGGGGTAAGCACAAGCAGCGCAACGA
CTCTTCTGAAGATGGAAGCTGCGACGGCCACATCGCACACACAAAGTGTG
CGTCTTGTTTCTCCTCTTACCAAAACTCCCTGTGCCCTTACCCATTGAAG
CGTAT
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