CB305128

Overview
NameCB305128
Unique NameCB305128
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB305128_ssr433 microsatellite CB305128_ssr433:433..444. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CB305128 vs. ExPASy Swiss-Prot
Match: LEGB_GOSHI (Legumin B OS=Gossypium hirsutum GN=LEGB PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.297e-27
Identity = 52/82 (63.41%), Postives = 66/82 (80.49%), Query Frame = -2
Query:  456 TQCNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRHRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET 701
            +QC +QNLNAL+P+ +  SEAG TEFWDQN +Q QCA VA  RH+IQ++GLL+P++T+ P +FYV QG GIHG VFPGC ET
Sbjct:   48 SQCQLQNLNALQPKHRFRSEAGETEFWDQNEDQFQCAGVAFLRHKIQRKGLLLPSFTSAPMLFYVEQGEGIHGAVFPGCPET 129          

HSP 2 Score: 72.0182 bits (175), Expect = 3.458e-12
Identity = 34/56 (60.71%), Postives = 45/56 (80.36%), Query Frame = -1
Query:  235 TNDVAMTSQLAGRASVLRGLPLDVIQNSFQVSRDEAQRLKYNRQELTVFTPGPRSQ 402
            TN  A  SQ+AGR S++RGLP+DV+ NSF +SR+EA RLK+NRQE++VF+P   SQ
Sbjct:  460 TNANAKISQIAGRVSIMRGLPVDVLANSFGISREEAMRLKHNRQEVSVFSPRQGSQ 515          
BLAST of CB305128 vs. ExPASy Swiss-Prot
Match: LEGA_GOSHI (Legumin A OS=Gossypium hirsutum GN=LEGA PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.094e-21
Identity = 42/81 (51.85%), Postives = 60/81 (74.07%), Query Frame = -2
Query:  456 QCNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRHRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET 698
            +C I  L A  P+ ++ SEAG TE+W+ N +QL+CA V+V R  I+  GL++P++TN P++ Y+VQGRGI G+V PGCAET
Sbjct:   33 ECQINRLRASAPQTRIRSEAGTTEWWNPNCQQLRCAGVSVMRQTIEPNGLVLPSFTNAPQLLYIVQGRGIQGIVMPGCAET 113          
BLAST of CB305128 vs. ExPASy Swiss-Prot
Match: CRU3_BRANA (Cruciferin CRU1 OS=Brassica napus GN=CRU1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.300e-19
Identity = 43/80 (53.75%), Postives = 59/80 (73.75%), Query Frame = -2
Query:  456 CNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRHRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET 695
            CN+ NL+ L+P + ++SEAG  E+WD NN Q++CA V+V R  I+Q GL +P + ++P+I YVVQG GI G V PGCAET
Sbjct:   37 CNLDNLDVLQPTETIKSEAGRVEYWDHNNPQIRCAGVSVSRVIIEQGGLYLPTFFSSPKISYVVQGMGISGRVVPGCAET 116          
BLAST of CB305128 vs. ExPASy Swiss-Prot
Match: LEGB4_VICFA (Legumin type B OS=Vicia faba GN=LEB4 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.698e-19
Identity = 38/81 (46.91%), Postives = 60/81 (74.07%), Query Frame = -2
Query:  456 QCNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRHRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET 698
            QC + N+NALEP  +VESEAG+TE W+ N+ +L+CA V++ R  I   GL +P+Y+ +P++ Y++QG+G+ G+  PGC +T
Sbjct:   32 QCRLDNINALEPDHRVESEAGLTETWNPNHPELRCAGVSLIRRTIDPNGLHLPSYSPSPQLIYIIQGKGVIGLTLPGCPQT 112          
BLAST of CB305128 vs. ExPASy Swiss-Prot
Match: GLUB5_ORYSJ (Glutelin type-B 5 OS=Oryza sativa subsp. japonica GN=GLUB5 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.698e-19
Identity = 42/81 (51.85%), Postives = 55/81 (67.90%), Query Frame = -2
Query:  456 QCNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRHRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET 698
            +C    L A EP ++V SEAGVTE++D+ NEQ QC    V R  I+ +GLLVP Y+NTP + Y++QGRG  G+ FPGC  T
Sbjct:   44 ECRFDRLQAFEPLRRVRSEAGVTEYFDEKNEQFQCTGTFVIRRVIEPQGLLVPRYSNTPGMVYIIQGRGSMGLTFPGCPAT 124          
BLAST of CB305128 vs. ExPASy Swiss-Prot
Match: GLUB4_ORYSJ (Glutelin type-B 4 OS=Oryza sativa subsp. japonica GN=GLUB4 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.698e-19
Identity = 42/81 (51.85%), Postives = 55/81 (67.90%), Query Frame = -2
Query:  456 QCNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRHRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET 698
            +C    L A EP ++V SEAGVTE++D+ NEQ QC    V R  I+ +GLLVP Y+NTP + Y++QGRG  G+ FPGC  T
Sbjct:   44 ECRFDRLQAFEPLRRVRSEAGVTEYFDEKNEQFQCTGTFVIRRVIEPQGLLVPRYSNTPGMVYIIQGRGSMGLTFPGCPAT 124          
BLAST of CB305128 vs. ExPASy Swiss-Prot
Match: GLUB2_ORYSJ (Glutelin type-B 2 OS=Oryza sativa subsp. japonica GN=GLUB2 PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.698e-19
Identity = 43/81 (53.09%), Postives = 54/81 (66.67%), Query Frame = -2
Query:  456 QCNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRHRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET 698
            +C    L A EP +KV SEAGVTE++D+ NE  QC    V R  IQ +GLLVP Y+NTP + Y++QGRG  G+ FPGC  T
Sbjct:   44 ECRFDRLQAFEPLRKVRSEAGVTEYFDEKNELFQCTGTFVIRRVIQPQGLLVPRYSNTPGLVYIIQGRGSMGLTFPGCPAT 124          
BLAST of CB305128 vs. ExPASy Swiss-Prot
Match: GLUB1_ORYSJ (Glutelin type-B 1 OS=Oryza sativa subsp. japonica GN=GluB1-A PE=2 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 2.218e-19
Identity = 43/81 (53.09%), Postives = 53/81 (65.43%), Query Frame = -2
Query:  456 QCNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRHRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET 698
            +C    L A EP +KV SEAGVTE++D+ NE  QC    V R  IQ +GLLVP YTN P + Y++QGRG  G+ FPGC  T
Sbjct:   44 ECRFDRLQAFEPLRKVRSEAGVTEYFDEKNELFQCTGTFVIRRVIQPQGLLVPRYTNIPGVVYIIQGRGSMGLTFPGCPAT 124          
BLAST of CB305128 vs. ExPASy Swiss-Prot
Match: 11SB_CUCMA (11S globulin subunit beta OS=Cucurbita maxima PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.218e-19
Identity = 39/80 (48.75%), Postives = 58/80 (72.50%), Query Frame = -2
Query:  456 CNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRHRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET 695
            C ++NL A +P ++ E+EA  TE WDQ+N++ QCA V + RH I+ +GLL+P ++N P++ +V QG GI G+  PGCAET
Sbjct:   48 CRLENLRAQDPVRRAEAEAIFTEVWDQDNDEFQCAGVNMIRHTIRPKGLLLPGFSNAPKLIFVAQGFGIRGIAIPGCAET 127          
BLAST of CB305128 vs. ExPASy Swiss-Prot
Match: CRU1_RAPSA (Cruciferin PGCRURSE5 OS=Raphanus sativus GN=CRURS PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.783e-19
Identity = 43/80 (53.75%), Postives = 59/80 (73.75%), Query Frame = -2
Query:  456 CNIQNLNALEPRQKVESEAGVTEFWDQNNEQLQCANVAVFRHRIQQRGLLVPAYTNTPEIFYVVQGRGIHGVVFPGCAET 695
            CN+ NL+ L+P + ++SEAG  E+WD N+ QL+CA V+V R  I+Q GL +P + ++P+I YVVQG GI G V PGCAET
Sbjct:   37 CNLDNLDVLQPTETIKSEAGRLEYWDHNHPQLRCAGVSVSRLIIEQGGLYLPTFFSSPKIAYVVQGMGISGRVVPGCAET 116          
The following BLAST results are available for this feature:
BLAST of CB305128 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
LEGB_GOSHI1.297e-2763.41Legumin B OS=Gossypium hirsutum GN=LEGB PE=2 SV=1[more]
LEGA_GOSHI3.094e-2151.85Legumin A OS=Gossypium hirsutum GN=LEGA PE=2 SV=2[more]
CRU3_BRANA1.300e-1953.75Cruciferin CRU1 OS=Brassica napus GN=CRU1 PE=3 SV=... [more]
LEGB4_VICFA1.698e-1946.91Legumin type B OS=Vicia faba GN=LEB4 PE=3 SV=1[more]
GLUB5_ORYSJ1.698e-1951.85Glutelin type-B 5 OS=Oryza sativa subsp. japonica ... [more]
GLUB4_ORYSJ1.698e-1951.85Glutelin type-B 4 OS=Oryza sativa subsp. japonica ... [more]
GLUB2_ORYSJ1.698e-1953.09Glutelin type-B 2 OS=Oryza sativa subsp. japonica ... [more]
GLUB1_ORYSJ2.218e-1953.09Glutelin type-B 1 OS=Oryza sativa subsp. japonica ... [more]
11SB_CUCMA2.218e-1948.7511S globulin subunit beta OS=Cucurbita maxima PE=1... [more]
CRU1_RAPSA3.783e-1953.75Cruciferin PGCRURSE5 OS=Raphanus sativus GN=CRURS ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IaR_F01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IaR_F01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305128 ID=CB305128; Name=CB305128; organism=Citrus sinensis; type=EST; length=702bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTNNATTTGAACAAAGAAATATTA
CTTTTTATTTTACTCGCACATTAAACTTACATACAGTCCCGCAGCATTCA
TGTCGTTCATGCCCATTAAGGCTTTTATTCATACATAGTCGTCCCTACCT
CAACTACTTACACTACACTACATAGCTTACTTCCTGATTACGTACCCATT
TACATAATTTCTCTTAGGCTACGGTTAAGCCCCACTGTGACCTAGGCCCT
GGAGTAAACACAGTCAGCTCCTGCCTGTTGTACTTCAACCTCTGAGCTTC
ATCCCTCGACACTTGGAACGAGTTCTGGATAACGTCCAACGGAAGTCCTC
TTAACACCGAAGCCCTTCCGGCCAGCTGGCTTGTCATGGCGACGTCGTTT
GTTGATCTTGGGATTTACTGCTCTGGAACGACTGTTGTTGTTGTGAATCT
TGGAAAGTCTCAGCACATCCGGGGAATACAACTCCATGAATGCCTCTACC
TTGAACAACATAGAAAATCTCAGGAGTGTTGGTGTACGCAGGCACGAGCA
GCCCTCTCTGCTGGATACGGTGGCGAAATACGGCAACATTGGCGCACTGT
AATTGCTCATTGTTCTGGTCCCAGAACTCTGTGACGCCAGCTTCGGATTC
GACCTTCTGTCGGGGCTCAAGGGCGTTGAGGTTCTGGATATTGCACTGGG
TT
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