CB305129

Overview
NameCB305129
Unique NameCB305129
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7279 contig Csv1_Contig7279:192..851. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB305129 vs. ExPASy Swiss-Prot
Match: GEM_ARATH (GLABRA2 expression modulator OS=Arabidopsis thaliana GN=GEM PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.006e-15
Identity = 41/55 (74.55%), Postives = 45/55 (81.82%), Query Frame = -3 
Query:  494 KVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFMGFVHCDSAVKNLLGAL 658
            KVVIPL QLKAVNPS S   PAEKYIQVISVDNHEFWFMGF++ D AV +L  +L
Sbjct:  237 KVVIPLHQLKAVNPSASIVNPAEKYIQVISVDNHEFWFMGFLNYDGAVTSLQDSL 291
[Close]
BLAST of CB305129 vs. ExPASy Swiss-Prot
Match: GEML1_ARATH (GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.823e-15
Identity = 38/55 (69.09%), Postives = 47/55 (85.45%), Query Frame = -3 
Query:  494 KVVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFMGFVHCDSAVKNLLGAL 658
            KVV+P +QLKAVNPSTS+   ++KYIQVIS+DNHEFWFMGFV  +SAVK+L  A+
Sbjct:  200 KVVLPANQLKAVNPSTSRVNTSDKYIQVISIDNHEFWFMGFVTYESAVKSLQEAV 254
[Close]
BLAST of CB305129 vs. ExPASy Swiss-Prot
Match: GEML3_ARATH (Putative GEM-like protein 3 OS=Arabidopsis thaliana GN=At4g40100 PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.227e-14
Identity = 39/62 (62.90%), Postives = 46/62 (74.19%), Query Frame = -3 
Query:  470 VVIPLSQLKAVNPSTSKAKPAEKYIQVISVDNHEFWFMGFVHCDSAVKNLLGALGPRSL*CV 655
            VVIPL QLK+VNPS S   PAEKYIQVISVD+HEFWFMGF++ + AV +L   L   +  CV
Sbjct:  177 VVIPLHQLKSVNPSISTVNPAEKYIQVISVDDHEFWFMGFLNYEGAVTSLQDTLQAGASVCV 238
The following BLAST results are available for this feature:
BLAST of CB305129 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
GEM_ARATH1.006e-1574.55GLABRA2 expression modulator OS=Arabidopsis thalia... [more]
GEML1_ARATH3.823e-1569.09GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1... [more]
GEML3_ARATH4.227e-1462.90Putative GEM-like protein 3 OS=Arabidopsis thalian... [more]
back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IaR_F02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IaR_F02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305129 ID=CB305129; Name=CB305129; organism=Citrus sinensis; type=EST; length=660bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCGCAAAAAAAATAGCTGA
AATCACATCATATATACAAAAAACTGCTTATTCTCACCAGGTACAAAGTT
CAAGCCAACAAATCCCATCCAACAACAATAGGAATCACACAGTGACTTAA
AAATGAATGCAACACGCATAATTTGTCTAAAATATTCAATAATTTACATA
TGATGGTTTGTCTACCTAGTAATACTAGCCACCACAAAAACTTATCCTAA
AAAATGCATCCCATAATGTGGCGTTCATGATGTTGAAAACAAAATGTGAT
TTGAAAATTGTACAAAGTCACGATCCACTCCATGAATGCCATTTCACATG
GCATCTCACTTGGGATACACTTTTTGGGATAAATTTTGCAATGACAAGCA
TTATTGTTTATCTACATTAACAATTGGTGAATGCAACTCTCCATGACATG
GTCAAATGATTTGACCCCAAACGCATCATAAGCTACGAGGCCCCAATGCT
CCCAAAAGATTTTTCACCGCACTATCACAATGCACAAAGCCCATGAACCA
AAACTCATGGTTGTCAACAGAGATGACCTGGATATATTTCTCAGCTGGCT
TGGCTTTGCTTGTTGAGGGATTGACTGCCTTCAGCTGACTCAATGGAATA
ACCACCTTAT
back to top