CB305130

Overview
NameCB305130
Unique NameCB305130
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length640
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305130 vs. ExPASy Swiss-Prot
Match: IF6_BOVIN (Eukaryotic translation initiation factor 6 OS=Bos taurus GN=EIF6 PE=2 SV=2)

HSP 1 Score: 241.506 bits (615), Expect = 2.735e-63
Identity = 119/155 (76.77%), Postives = 133/155 (85.81%), Query Frame = -3
Query:  174 LPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSLID 638
            LPD V ++R+EERLSALGN   CND+VAL H DLDRETEE++ADVL VEVFRQT+A  +LVGSYC FSN+GGLVHP TSIED DELS+LLQVPLVAGTVNRGSEVIAAG+ VNDW AFCG DTT+TELSV+ESVFKL EAQPS +   MR SLID
Sbjct:   88 LPDSVQIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSLID 242          
BLAST of CB305130 vs. ExPASy Swiss-Prot
Match: IF6_HUMAN (Eukaryotic translation initiation factor 6 OS=Homo sapiens GN=EIF6 PE=1 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 3.572e-63
Identity = 119/155 (76.77%), Postives = 133/155 (85.81%), Query Frame = -3
Query:  174 LPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSLID 638
            LPD V ++R+EERLSALGN   CND+VAL H DLDRETEE++ADVL VEVFRQT+A  +LVGSYC FSN+GGLVHP TSIED DELS+LLQVPLVAGTVNRGSEVIAAG+ VNDW AFCG DTT+TELSV+ESVFKL EAQPS +   MR SLID
Sbjct:   88 LPDTVQIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSLID 242          
BLAST of CB305130 vs. ExPASy Swiss-Prot
Match: IF6_MOUSE (Eukaryotic translation initiation factor 6 OS=Mus musculus GN=Eif6 PE=1 SV=2)

HSP 1 Score: 239.965 bits (611), Expect = 7.957e-63
Identity = 118/155 (76.13%), Postives = 133/155 (85.81%), Query Frame = -3
Query:  174 LPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSLID 638
            LPD V ++R+EERLSALGN   CND+VAL H DLDRETEE++ADVL VEVFRQT+A  +LVGSYC FSN+GGLVHP TSIED DELS+LLQVPLVAGTVNRGSEVIAAG+ VNDW AFCG DTT+TELSV+ESVFKL EA+PS +   MR SLID
Sbjct:   88 LPDSVQIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAKPSTIATSMRDSLID 242          
BLAST of CB305130 vs. ExPASy Swiss-Prot
Match: IF6_ARATH (Eukaryotic translation initiation factor 6 OS=Arabidopsis thaliana GN=At2g39820 PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 2.830e-60
Identity = 112/158 (70.89%), Postives = 137/158 (86.71%), Query Frame = -3
Query:  165 LPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSLIDGYV 638
            LPD+VVVQRIEE + ALGN IACND+VAL H  L+++TEE+I+DVLGVEV+RQTIA N LVGSYCS SN GG+VH +T++E++ EL+ L+QVPLVAGTVNRGS+VI+AGLTVNDWTAFCGSDTTA ELSV+ ++FKL ++QP  +  EMRKSLID YV
Sbjct:   90 LPDEVVVQRIEEPICALGNAIACNDYVALVHPKLEKDTEEIISDVLGVEVYRQTIANNELVGSYCSLSNNGGMVHSNTNVEEMVELANLVQVPLVAGTVNRGSQVISAGLTVNDWTAFCGSDTTAVELSVVNNIFKLVQSQPDFVGSEMRKSLIDTYV 247          
BLAST of CB305130 vs. ExPASy Swiss-Prot
Match: IF6_DICDI (Probable eukaryotic translation initiation factor 6 OS=Dictyostelium discoideum GN=eif6 PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 8.234e-60
Identity = 109/155 (70.32%), Postives = 135/155 (87.10%), Query Frame = -3
Query:  174 LPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSLID 638
            LPD VVVQRIEE+ SALGNCIA ND+VAL H D+DRETEE+IADVLGVEVFRQT++GN+LVG+YC+ +N+G LVHP TSI D DELS+LLQVPLVAGTVNRG+E +AAG  VNDWTA  G+DTTATE+SVIES+F L+ ++PS +++ +R S++D
Sbjct:   88 LPDDVVVQRIEEKFSALGNCIATNDYVALVHPDIDRETEEIIADVLGVEVFRQTVSGNVLVGTYCALTNQGALVHPMTSIADQDELSSLLQVPLVAGTVNRGNECVAAGCVVNDWTAIVGADTTATEISVIESIFALQGSKPSNIINNIRNSIVD 242          
BLAST of CB305130 vs. ExPASy Swiss-Prot
Match: IF6_SCHPO (Eukaryotic translation initiation factor 6 OS=Schizosaccharomyces pombe GN=tif6 PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 1.834e-59
Identity = 109/157 (69.43%), Postives = 135/157 (85.99%), Query Frame = -3
Query:  168 LPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSLIDGY 638
            LPD V +QR++ERLSALGN +ACND+VAL H D++RETEE+IADVL VEVFRQT+AGN+L GSYC+ SN+G LVHP TSI++ DELS+LLQVPLVAGT+NRGS+VI AGL VNDW AF G DTTATEL+V ES+FKL++AQPSA++   R +L++ Y
Sbjct:   88 LPDPVKIQRVDERLSALGNIVACNDYVALVHPDIERETEEIIADVLDVEVFRQTVAGNVLTGSYCALSNQGALVHPRTSIQEQDELSSLLQVPLVAGTINRGSDVIGAGLVVNDWCAFAGLDTTATELAVCESIFKLQDAQPSAIISN-RDTLVESY 243          
BLAST of CB305130 vs. ExPASy Swiss-Prot
Match: IF6_YEAST (Eukaryotic translation initiation factor 6 OS=Saccharomyces cerevisiae GN=TIF6 PE=1 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.396e-59
Identity = 110/157 (70.06%), Postives = 134/157 (85.35%), Query Frame = -3
Query:  168 LPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSLIDGY 638
            LPD V +QR+EERLSALGN I CND+VAL H D+DRETEE+I+DVLGVEVFRQTI+GNILVGSYCS SN+GGLVHP TS++D +ELS+LLQVPLVAGTVNRGS V+ AG+ VND+ A  G DTTA ELSVIES+F+L++AQP ++   +R +LI+ Y
Sbjct:   88 LPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVPLVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRLQDAQPESISGNLRDTLIETY 244          
BLAST of CB305130 vs. ExPASy Swiss-Prot
Match: IF6_DROME (Probable eukaryotic translation initiation factor 6 OS=Drosophila melanogaster GN=eIF6 PE=2 SV=3)

HSP 1 Score: 223.787 bits (569), Expect = 5.901e-58
Identity = 111/155 (71.61%), Postives = 132/155 (85.16%), Query Frame = -3
Query:  174 LPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPSALVDEMRKSLID 638
            LPD V + R+EERLSALGN IACND+VAL H DLD+ETEE+IADVL VEVFRQTIA N LVGSY   SN+GG+VHP TSI+D DELS+LLQVPLVAGTVNRGSEV+AAG+ VNDW +F G +TTATE+SVIESVFKL +AQP+ +  ++R +LI+
Sbjct:   88 LPDAVKIYRVEERLSALGNVIACNDYVALVHPDLDKETEEIIADVLKVEVFRQTIADNSLVGSYAVLSNQGGMVHPKTSIQDQDELSSLLQVPLVAGTVNRGSEVLAAGMVVNDWLSFVGMNTTATEISVIESVFKLNQAQPATVTTKLRAALIE 242          
BLAST of CB305130 vs. ExPASy Swiss-Prot
Match: IF6_BETVU (Eukaryotic translation initiation factor 6 (Fragment) OS=Beta vulgaris PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.721e-49
Identity = 96/106 (90.57%), Postives = 103/106 (97.17%), Query Frame = -3
Query:  321 LPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVI 638
            LPD VVVQRIEE+LSALGNCIACND+VALTHTDLD+ETEE+IADVLGVEVF QTIAGNILVGSYC+ +N+GGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVI
Sbjct:   88 LPDSVVVQRIEEKLSALGNCIACNDYVALTHTDLDKETEELIADVLGVEVFGQTIAGNILVGSYCAITNKGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVI 193          
BLAST of CB305130 vs. ExPASy Swiss-Prot
Match: IF6_CAEEL (Eukaryotic translation initiation factor 6 OS=Caenorhabditis elegans GN=eif-6 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.508e-45
Identity = 88/156 (56.41%), Postives = 120/156 (76.92%), Query Frame = -3
Query:  174 LPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKLRE-AQPSALVDEMRKSLID 638
            LPD+V ++R++ERLSALGN IACNDHVA+ H ++  ETE+ + +VL VEVFR ++A N LVGSYC  S+ G LV   T  E   E++ LLQ+P+VAGT NRGSE+I AG+ VNDW AFCG D+T+TELSV+ES+FKL E   P+++ +++R +LI+
Sbjct:   88 LPDEVAIRRVDERLSALGNVIACNDHVAIVHAEISAETEQALVEVLKVEVFRVSLAQNSLVGSYCILSSNGCLVAARTPPETQREIAALLQIPVVAGTCNRGSELIGAGMVVNDWVAFCGLDSTSTELSVVESIFKLGEQGAPTSISNQLRDTLIE 243          
The following BLAST results are available for this feature:
BLAST of CB305130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
IF6_BOVIN2.735e-6376.77Eukaryotic translation initiation factor 6 OS=Bos ... [more]
IF6_HUMAN3.572e-6376.77Eukaryotic translation initiation factor 6 OS=Homo... [more]
IF6_MOUSE7.957e-6376.13Eukaryotic translation initiation factor 6 OS=Mus ... [more]
IF6_ARATH2.830e-6070.89Eukaryotic translation initiation factor 6 OS=Arab... [more]
IF6_DICDI8.234e-6070.32Probable eukaryotic translation initiation factor ... [more]
IF6_SCHPO1.834e-5969.43Eukaryotic translation initiation factor 6 OS=Schi... [more]
IF6_YEAST2.396e-5970.06Eukaryotic translation initiation factor 6 OS=Sacc... [more]
IF6_DROME5.901e-5871.61Probable eukaryotic translation initiation factor ... [more]
IF6_BETVU1.721e-4990.57Eukaryotic translation initiation factor 6 (Fragme... [more]
IF6_CAEEL1.508e-4556.41Eukaryotic translation initiation factor 6 OS=Caen... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IaR_F03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IaR_F03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305130 ID=CB305130; Name=CB305130; organism=Citrus sinensis; type=EST; length=640bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTGAATATGATACTTCTGA
TTGAGATACAAGATTCTGGAAAATAACATACTATCATTAAGGGAAAACAT
CTTCAGAGTTGACAAACACCGCTTCAACTTCATGACAAAAAAGACTGTAA
GCCAAAGTAACTTAAACATAACCGTCAATTAAAGATTTCCTCATCTCGTC
CACAAGGGCACTAGGTTGAGCTTCCCTCAACTTGAAAACACTCTCAATAA
CAGAGAGTTCAGTTGCTGTGGTGTCTGATCCACAGAATGCTGTCCAGTCA
TTCACAGTTAACCCAGCAGCTATGACTTCGCTTCCACGGTTCACAGTCCC
AGCCACCAAAGGTACTTGCAAGAGAGTTGAAAGTTCATCCAAGTCCTCAA
TGGATGTGTGAGGGTGAACCAAGCCTCCTCTGTTGGAGAAGGAACAGTAA
CTGCCAACAAGGATATTACCAGCAATTGTCTGCCTAAAAACTTCTACTCC
AAGAACATCTGCAATCATTTCCTCTGTTTCCCTGTCAAGATCTGTGTGTG
TAAGAGCAACATGGTCGTTGCATGCTATACAGTTGCCCAGGGCAGATAGC
CTCTCTTCAATACGCTGAACGACAACTTGATCAGGTAGGC
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