CB305131

Overview
NameCB305131
Unique NameCB305131
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length499
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305131 vs. ExPASy Swiss-Prot
Match: U195A_ARATH (UPF0195 protein At1g68310 OS=Arabidopsis thaliana GN=At1g68310 PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 3.394e-29
Identity = 58/93 (62.37%), Postives = 76/93 (81.72%), Query Frame = -2
Query:  220 ESITVDEKLGRILITFTPTIQHCSMAAVIGFCLRVKLKEFFPPHFKLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYSCE 498
            +S+ VD++   + +TFTPT++HCSMA VIG C+RVKL    P  +K+DI+VAPGSHA E+++NKQLNDKER+AAALENPNL ++VDECL S E
Sbjct:   65 DSVEVDDENSYVRVTFTPTVEHCSMATVIGLCVRVKLLRSLPSRYKIDIRVAPGSHATEDALNKQLNDKERVAAALENPNLVEMVDECLPSEE 157          
BLAST of CB305131 vs. ExPASy Swiss-Prot
Match: FA96A_HUMAN (UPF0195 protein FAM96A OS=Homo sapiens GN=FAM96A PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 6.199e-23
Identity = 45/85 (52.94%), Postives = 68/85 (80.00%), Query Frame = -2
Query:  232 VDEKLGRILITFTPTIQHCSMAAVIGFCLRVKLKEFFPPHFKLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECL 486
            ++E+   ++I FTPT+ HCS+A +IG CLRVKL+   P   KL+I ++ G+H+ EE +NKQ+NDKER+AAA+ENPNLR++V++C+
Sbjct:   72 INEEEYLVIIRFTPTVPHCSLATLIGLCLRVKLQRCLPFKHKLEIYISEGTHSTEEDINKQINDKERVAAAMENPNLREIVEQCV 156          
BLAST of CB305131 vs. ExPASy Swiss-Prot
Match: FA96A_MOUSE (UPF0195 protein FAM96A OS=Mus musculus GN=Fam96a PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 8.096e-23
Identity = 47/89 (52.81%), Postives = 69/89 (77.53%), Query Frame = -2
Query:  232 ESITVDEKLGRILITFTPTIQHCSMAAVIGFCLRVKLKEFFPPHFKLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECL 498
            + I  D+ L  ++I FTPT+ HCS+A +IG CLRVKL+   P   KL+I ++ G+H+ EE +NKQ+NDKER+AAA+ENPNLR++V++C+
Sbjct:   70 QEINEDDYL--VIIKFTPTVPHCSLATLIGLCLRVKLQRCLPFKHKLEIYISEGTHSTEEDINKQINDKERVAAAMENPNLREIVEQCV 156          
BLAST of CB305131 vs. ExPASy Swiss-Prot
Match: FA96A_BOVIN (UPF0195 protein FAM96A OS=Bos taurus GN=FAM96A PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 8.096e-23
Identity = 47/89 (52.81%), Postives = 69/89 (77.53%), Query Frame = -2
Query:  232 ESITVDEKLGRILITFTPTIQHCSMAAVIGFCLRVKLKEFFPPHFKLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECL 498
            + I  D+ L  ++I FTPT+ HCS+A +IG CLRVKL+   P   KL+I ++ G+H+ EE +NKQ+NDKER+AAA+ENPNLR++V++C+
Sbjct:   70 QEINEDDYL--VIIRFTPTVPHCSLATLIGLCLRVKLQRCLPFKHKLEIYISEGTHSTEEDINKQINDKERVAAAMENPNLREIVEQCV 156          
BLAST of CB305131 vs. ExPASy Swiss-Prot
Match: U195B_DROME (UPF0195 protein CG30152 OS=Drosophila melanogaster GN=CG30152 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.527e-21
Identity = 44/78 (56.41%), Postives = 59/78 (75.64%), Query Frame = -2
Query:  232 ILITFTPTIQHCSMAAVIGFCLRVKLKEFFPPHFKLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECL 465
            + I F PT+ HCS+A +IG C+RVK++   P + KLDI +  G+H  EE +NKQ+NDKERIAAA+ENPNLR LV+ C+
Sbjct:  137 VRIEFNPTVPHCSLATLIGLCIRVKVERGLPHNIKLDIYIKKGAHQTEEEINKQINDKERIAAAMENPNLRDLVENCI 214          
BLAST of CB305131 vs. ExPASy Swiss-Prot
Match: U195B_ARATH (UPF0195 protein At3g09380 OS=Arabidopsis thaliana GN=At3g09380 PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 1.994e-21
Identity = 47/92 (51.09%), Postives = 63/92 (68.48%), Query Frame = -2
Query:  223 ESITVDEKLGRILITFTPTIQHCSMAAVIGFCLRVKLKEFFPPHFKLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECLYSC 498
            ES+ VD+    + ITFTPT+ HC +   IG C+ VKL +  P  FK+D++VAPGSH  E +VNKQL DKER+ AALENP L  L+++ +  C
Sbjct:   58 ESVEVDDHKSYVRITFTPTLPHCHLPTHIGLCILVKLVQSLPARFKVDVRVAPGSHDKETTVNKQLGDKERVTAALENPELVALLNKMMQVC 149          
BLAST of CB305131 vs. ExPASy Swiss-Prot
Match: U195A_DROME (UPF0195 protein CG7949 OS=Drosophila melanogaster GN=CG7949 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.443e-21
Identity = 44/87 (50.57%), Postives = 65/87 (74.71%), Query Frame = -2
Query:  232 ITVDEKLGRILITFTPTIQHCSMAAVIGFCLRVKLKEFFPPHFKLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECL 492
            I +++    + I+FTPTI HCSMA +IG  +RVKL    PP FK+ +++ PG+HA E +VNKQL DKER+AAALEN +L +++++C+
Sbjct:   66 IRINDSQNSVHISFTPTIPHCSMATLIGLSIRVKLLRSLPPRFKVTVEITPGTHASELAVNKQLADKERVAAALENNHLAEVINQCI 152          
BLAST of CB305131 vs. ExPASy Swiss-Prot
Match: FA96B_MOUSE (UPF0195 protein FAM96B OS=Mus musculus GN=Fam96b PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 5.802e-21
Identity = 45/87 (51.72%), Postives = 62/87 (71.26%), Query Frame = -2
Query:  232 ITVDEKLGRILITFTPTIQHCSMAAVIGFCLRVKLKEFFPPHFKLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECL 492
            I V +    + + FTPTI HCSMA +IG  ++VKL    P  FK+D+ + PG+HA E +VNKQL DKER+AAALEN +L ++V++CL
Sbjct:   73 IQVSDPESTVAVAFTPTIPHCSMATLIGLSIKVKLLRSLPQRFKMDVHITPGTHASEHAVNKQLADKERVAAALENTHLLEVVNQCL 159          
BLAST of CB305131 vs. ExPASy Swiss-Prot
Match: FA96B_HUMAN (UPF0195 protein FAM96B OS=Homo sapiens GN=FAM96B PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 7.578e-21
Identity = 44/87 (50.57%), Postives = 62/87 (71.26%), Query Frame = -2
Query:  232 ITVDEKLGRILITFTPTIQHCSMAAVIGFCLRVKLKEFFPPHFKLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECL 492
            + V +    + + FTPTI HCSMA +IG  ++VKL    P  FK+D+ + PG+HA E +VNKQL DKER+AAALEN +L ++V++CL
Sbjct:   73 VQVSDPESTVAVAFTPTIPHCSMATLIGLSIKVKLLRSLPQRFKMDVHITPGTHASEHAVNKQLADKERVAAALENTHLLEVVNQCL 159          
BLAST of CB305131 vs. ExPASy Swiss-Prot
Match: U195_CAEEL (UPF0195 protein F45G2.10 OS=Caenorhabditis elegans GN=F45G2.10 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.912e-20
Identity = 44/87 (50.57%), Postives = 60/87 (68.97%), Query Frame = -2
Query:  232 ITVDEKLGRILITFTPTIQHCSMAAVIGFCLRVKLKEFFPPHFKLDIKVAPGSHADEESVNKQLNDKERIAAALENPNLRQLVDECL 492
            + +DE+   + + FTPTI HCSMA +IG  +RVKL     P  K+ + + PGSH+ EES+N+QL DKER+AAA+EN  L   V+ECL
Sbjct:   70 VFIDEEETFVKVNFTPTIPHCSMATLIGLAIRVKLLRSLHPKVKVSVSITPGSHSTEESINRQLADKERVAAAMENQGLMHAVNECL 156          
The following BLAST results are available for this feature:
BLAST of CB305131 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
U195A_ARATH3.394e-2962.37UPF0195 protein At1g68310 OS=Arabidopsis thaliana ... [more]
FA96A_HUMAN6.199e-2352.94UPF0195 protein FAM96A OS=Homo sapiens GN=FAM96A P... [more]
FA96A_MOUSE8.096e-2352.81UPF0195 protein FAM96A OS=Mus musculus GN=Fam96a P... [more]
FA96A_BOVIN8.096e-2352.81UPF0195 protein FAM96A OS=Bos taurus GN=FAM96A PE=... [more]
U195B_DROME1.527e-2156.41UPF0195 protein CG30152 OS=Drosophila melanogaster... [more]
U195B_ARATH1.994e-2151.09UPF0195 protein At3g09380 OS=Arabidopsis thaliana ... [more]
U195A_DROME4.443e-2150.57UPF0195 protein CG7949 OS=Drosophila melanogaster ... [more]
FA96B_MOUSE5.802e-2151.72UPF0195 protein FAM96B OS=Mus musculus GN=Fam96b P... [more]
FA96B_HUMAN7.578e-2150.57UPF0195 protein FAM96B OS=Homo sapiens GN=FAM96B P... [more]
U195_CAEEL4.912e-2050.57UPF0195 protein F45G2.10 OS=Caenorhabditis elegans... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IaR_F04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IaR_F04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305131 ID=CB305131; Name=CB305131; organism=Citrus sinensis; type=EST; length=499bp
TTTTTTTTTTTTTTTNNTTTTTTTTTTTTTGGCGTCTGTAAAAGGATTCA
TAAATTGATCAATAAGCCAACAAAAATGGAGGAGGCACACAACAGAGGGA
CAGTAAAGTCATTACATCAAATTCATTTTACAACAACATTTCTTATTACA
TACACCCCAATACTGCTGCTGTTTACTCTGTACAGTGATTTTTGCTCAGT
TGAGTGCACTTGCTCAAATTTCACAGGAATAAAGACACTCATCAACAAGT
TGGCGAAGGTTAGGATTCTCCAAAGCAGCTGCAATTCTTTCTTTATCATT
CAACTGCTTATTAACTGATTCTTCATCAGCATGGGATCCAGGAGCAACTT
TGATGTCAAGCTTGAAATGCGGAGGGAAAAATTCTTTCAGTTTAACCCTC
AAGCAGAAACCAATCACCGCCGCCATACTGCAATGCTGAATAGTGGGAGT
GAAAGTTATCAAAATACGCCCAAGCTTCTCGTCAACAGTGATCGATTCC
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