CB305141

Overview
NameCB305141
Unique NameCB305141
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9763 contig Csv1_Contig9763:398..1036. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305141 vs. ExPASy Swiss-Prot
Match: AGL9_PETHY (Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida GN=FBP2 PE=1 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 2.577e-37
Identity = 87/134 (64.93%), Postives = 96/134 (71.64%), Query Frame = -2
Query:  237 SKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPPLQIGYQPADPISVVTAGPSLNNYMQGWLP 638
            SKELESLERQLDMSLKQIRSTRTQ MLD L +LQ KE  L+EAN+TLKQR             LMEG  +N LQ   +A+D GYG +  Q QGD FFH LECEP LQIGYQ  DPI+V  AGPS+NNYM GWLP
Sbjct:  123 SKELESLERQLDMSLKQIRSTRTQLMLDQLQDLQRKEHALNEANRTLKQR-------------LMEGSTLN-LQWQQNAQDVGYGRQATQTQGDGFFHPLECEPTLQIGYQ-NDPITVGGAGPSVNNYMAGWLP 241          
BLAST of CB305141 vs. ExPASy Swiss-Prot
Match: MTF1_PEA (MADS-box transcription factor 1 OS=Pisum sativum GN=MTF1 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.671e-36
Identity = 84/137 (61.31%), Postives = 94/137 (68.61%), Query Frame = -2
Query:  237 SKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLMEGYQVNTLQLNPSAEDCGYGL-KPAQPQGDTFFHA--LECEPPLQIGYQPADPISVVTAGPSLNNYMQGWLP 638
            SK+LE+LERQLD SLKQIRSTRTQ+MLD L +LQ KE LL EAN+ L+QR              MEGYQ+N+LQLN SAED GYG        GD  F    +ECEP LQIGY   DP SVVTAGPS+NNYM GWLP
Sbjct:  125 SKDLETLERQLDSSLKQIRSTRTQFMLDQLGDLQRKEHLLCEANRALRQR--------------MEGYQINSLQLNLSAEDMGYGRHHQGHTHGDELFQVQPIECEPTLQIGYHQGDPGSVVTAGPSMNNYMGGWLP 247          
BLAST of CB305141 vs. ExPASy Swiss-Prot
Match: SEP3_ARATH (Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.158e-27
Identity = 74/137 (54.01%), Postives = 89/137 (64.96%), Query Frame = -2
Query:  237 SKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLMEGYQVNTLQLNPSAEDCG-YGLKPAQPQ--GDTFFHALECEPPLQIGYQPADPISVVTAGPSLNNYMQGWLP 638
            +KELESLERQLD SLKQIR+ RTQ+MLD L +LQ KE++L+E NKTL+             L+L +GYQ+  LQLNP+ E+   YG    Q Q     FF  LECEP LQIGYQ       + AGPS+NNYM GWLP
Sbjct:  125 TKELESLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLTETNKTLR-------------LRLADGYQM-PLQLNPNQEEVDHYGRHHHQQQQHSQAFFQPLECEPILQIGYQGQQ--DGMGAGPSVNNYMLGWLP 245          
BLAST of CB305141 vs. ExPASy Swiss-Prot
Match: AGL9_ARADE (Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.035e-27
Identity = 72/136 (52.94%), Postives = 87/136 (63.97%), Query Frame = -2
Query:  240 SKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLMEGYQVNTLQL-NPS-AEDCGYGLKPAQPQGDTFFHALECEPPLQIGYQPADPISVVTAGPSLNNYM-QGWL 638
            SKELE LERQLD SL+QIRSTRTQ+MLD L +LQ +EQ+L EANKTLK+R               E  Q N  Q+ +PS     GYG +PAQ  G+ F+H LECEP LQIGY     ++  TA  ++NNYM  GWL
Sbjct:  121 SKELEQLERQLDSSLRQIRSTRTQFMLDQLADLQRREQMLCEANKTLKRR-------------FEESSQANQQQVWDPSNTHAVGYGRQPAQHHGEAFYHPLECEPTLQIGYHSDITMATATAS-TVNNYMPPGWL 242          
BLAST of CB305141 vs. ExPASy Swiss-Prot
Match: AGL9_SINAL (Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba GN=AGL9 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.673e-26
Identity = 73/139 (52.52%), Postives = 89/139 (64.03%), Query Frame = -2
Query:  237 SKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLMEGYQVNTLQLNPSAED--CGYGLKPAQPQGDT---FFHALECEPPLQIGYQPADPISVVTAGPSLNNYMQGWLP 638
            +KELE LERQLD SLKQIR+ RTQ+MLD L +LQ KE++L+E NKTL+             L+L +GYQ+  LQLNP+ ED    YG    Q Q ++   FF  LECEP LQ+GYQ       + AGPS NNYM GWLP
Sbjct:  125 TKELELLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLNETNKTLR-------------LRLADGYQM-PLQLNPNQEDHHVDYGRHDQQQQQNSHHAFFQPLECEPILQMGYQGQQDHG-MEAGPSENNYMLGWLP 248          
BLAST of CB305141 vs. ExPASy Swiss-Prot
Match: AGL9_SOLLC (Agamous-like MADS-box protein AGL9 homolog OS=Solanum lycopersicum GN=TDR5 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.433e-18
Identity = 47/71 (66.20%), Postives = 51/71 (71.83%), Query Frame = -2
Query:  426 SKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLMEGYQVN 638
            SKELESLERQLDMSLKQIRSTRTQ MLD LT+ Q KE  L+EAN+TLKQR             LMEG Q+N
Sbjct:  123 SKELESLERQLDMSLKQIRSTRTQLMLDQLTDYQRKEHALNEANRTLKQR-------------LMEGSQLN 180          

HSP 2 Score: 29.261 bits (64), Expect = 2.433e-18
Identity = 15/31 (48.39%), Postives = 18/31 (58.06%), Query Frame = -3
Query:  314 VQKIVVMGLNQLNLRAIPSFTPWNVNPHCKL 406
            + K+  M   QL LRA+ SF  W VN  CKL
Sbjct:  186 MHKLWAMAGKQLKLRAMASFILWIVNLLCKL 216          
BLAST of CB305141 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSJ (MADS-box transcription factor 7 OS=Oryza sativa subsp. japonica GN=MADS7 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 4.571e-18
Identity = 58/136 (42.65%), Postives = 82/136 (60.29%), Query Frame = -2
Query:  237 KELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLME-GYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALEC--EPPLQIGYQPADPISVVTAGPSLNNYMQGWLP 635
            KELESLE+QLD SLK +R+TRT++++D LTELQ KEQ++SEAN+ L+++     H    G Q+ E G  +   +  P  +   +G       G+ FFH L+   EP LQIGY PA+    + +   +N YM  WLP
Sbjct:  125 KELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRRKLEESNHV--RGQQVWEQGCNLIGYERQPEVQQPLHG-------GNGFFHPLDAAGEPTLQIGY-PAEHHEAMNSA-CMNTYMPPWLP 249          
BLAST of CB305141 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSI (MADS-box transcription factor 7 OS=Oryza sativa subsp. indica GN=MADS7 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 4.571e-18
Identity = 58/136 (42.65%), Postives = 82/136 (60.29%), Query Frame = -2
Query:  237 KELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHADFAGLQLME-GYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALEC--EPPLQIGYQPADPISVVTAGPSLNNYMQGWLP 635
            KELESLE+QLD SLK +R+TRT++++D LTELQ KEQ++SEAN+ L+++     H    G Q+ E G  +   +  P  +   +G       G+ FFH L+   EP LQIGY PA+    + +   +N YM  WLP
Sbjct:  125 KELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRRKLEESNHV--RGQQVWEQGCNLIGYERQPEVQQPLHG-------GNGFFHPLDAAGEPTLQIGY-PAEHHEAMNSA-CMNTYMPPWLP 249          
BLAST of CB305141 vs. ExPASy Swiss-Prot
Match: SEP2_ARATH (Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.126e-16
Identity = 56/141 (39.72%), Postives = 79/141 (56.03%), Query Frame = -2
Query:  240 SKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR---TMTLRHADFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPPLQIGYQP---ADPISVVTAGPSL--NNYMQGWL 638
            SKELE LERQLD SLKQ+R  +TQYMLD L++LQ KE +L +AN+ L  +    + +RH    G     G++          ++  YG   A  QG   + +LEC+P LQIGY     ++ ++V   G S   N Y+ GW+
Sbjct:  122 SKELEQLERQLDGSLKQVRCIKTQYMLDQLSDLQGKEHILLDANRALSMKLEDMIGVRHHHIGG-----GWE------GGDQQNIAYGHPQAHSQG--LYQSLECDPTLQIGYSHPVCSEQMAVTVQGQSQQGNGYIPGWM 249          
BLAST of CB305141 vs. ExPASy Swiss-Prot
Match: SEP1_ARATH (Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 5.587e-16
Identity = 57/141 (40.43%), Postives = 76/141 (53.90%), Query Frame = -2
Query:  240 SKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR---TMTLRHADFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPPLQIGYQP---ADPISVVTAGPSL--NNYMQGWL 638
            SKELE LERQLD SLKQ+RS +TQYMLD L++LQ+KEQ+L E N+ L  +    + +R     G    EG + N            Y    AQ QG   +  LEC P LQ+GY     ++ I+  T   +   N Y+ GW+
Sbjct:  122 SKELEQLERQLDGSLKQVRSIKTQYMLDQLSDLQNKEQMLLETNRALAMKLDDMIGVRSHHMGGGGGWEGGEQNVT----------YAHHQAQSQG--LYQPLECNPTLQMGYDNPVCSEQITATTQAQAQQGNGYIPGWM 250          
The following BLAST results are available for this feature:
BLAST of CB305141 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
AGL9_PETHY2.577e-3764.93Agamous-like MADS-box protein AGL9 homolog OS=Petu... [more]
MTF1_PEA1.671e-3661.31MADS-box transcription factor 1 OS=Pisum sativum G... [more]
SEP3_ARATH3.158e-2754.01Developmental protein SEPALLATA 3 OS=Arabidopsis t... [more]
AGL9_ARADE7.035e-2752.94Agamous-like MADS-box protein AGL9 homolog OS=Aran... [more]
AGL9_SINAL2.673e-2652.52Agamous-like MADS-box protein AGL9 homolog OS=Sina... [more]
AGL9_SOLLC2.433e-1866.20Agamous-like MADS-box protein AGL9 homolog OS=Sola... [more]
MADS7_ORYSJ4.571e-1842.65MADS-box transcription factor 7 OS=Oryza sativa su... [more]
MADS7_ORYSI4.571e-1842.65MADS-box transcription factor 7 OS=Oryza sativa su... [more]
SEP2_ARATH1.126e-1639.72Developmental protein SEPALLATA 2 OS=Arabidopsis t... [more]
SEP1_ARATH5.587e-1640.43Developmental protein SEPALLATA 1 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IaR_G05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IaR_G05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305141 ID=CB305141; Name=CB305141; organism=Citrus sinensis; type=EST; length=639bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAAAATACACGCACACAC
AACATAGCTATATATCGTCATCAGTTTCCCTAAAGGGCAGGATCACTGTA
AAGTTATTATAATAAATCCTTATGATTGCGTGTTCCTAGTCACTGAATAG
GGTTGCTTACAAAGGGATACAAAGTTGCTGATTCTTATGGATCAACTGCA
ATACATTGACTGGTAATGCCCGCCGCTCTCTTAGCATGGTAGCCATCCTT
GCATGTAATTATTCAAACTCGGGCCTGCTGTGACAACCGATATTGGGTCC
GCAGGCTGGTATCCAATTTGCAATGGGGGTTCACATTCCAAGGCGTGAAA
GAAGGTATCGCCCTGAGGTTGAGCTGGTTTAAGCCCATAACCACAATCTT
CTGCACTAGGATTCAATTGAAGTGTGTTCACTTGGTATCCCTCCATCAAC
TGCAAACCAGCAAAATCGGCGTGCCTTAGCGTCATCGTCCTTTGTTTGAG
GGTCTTATTTGCTTCGCTCAGCAACTGTTCCTTATGTTGCAGTTCAGTAA
GGGTATCCAGCATGTACTGAGTTCTTGTTGATCTGATCTGCTTCAATGAC
ATATCAAGCTGCCTTTCAAGTGACTCAAGCTCTTTGCTG
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