CB322082

Overview
NameCB322082
Unique NameCB322082
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length474
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3495 contig Csv1_Contig3495:393..866. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CB322082 vs. ExPASy Swiss-Prot
Match: SYM_ORYSJ (Probable methionyl-tRNA synthetase OS=Oryza sativa subsp. japonica GN=Os06g0508700 PE=2 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 3.462e-38
Identity = 79/157 (50.32%), Postives = 100/157 (63.69%), Query Frame = 3 
Query:    3 EPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPLFKELKDDEVEFFRSKFAGSQADRIIRXXXXXXXXXXXXXXXXISDXXXXXXXXXXXXXXXXXXXXXEPEISIARLDIRVGKITKVQKHPDADALYVEEIDVGE 473
            EPFMPSFS EV  QLN+ PE+ +S CD+KG++ +A+RPW+ + AGHKIG P+PLFKELKD+EVE FR+KFAGSQA+R  +                                        E ++++A+LDIRVG I K QKHPDAD+LYVEEIDVGE
Sbjct:  515 EPFMPSFSNEVLLQLNMTPEESLSFCDDKGEIAKAKRPWDFVSAGHKIGKPSPLFKELKDEEVESFRNKFAGSQAERSSKAQADAEAKKVADKLKGTKLSDGGQKKEQKKQSGGSKSKNAEVDVTVAKLDIRVGLIRKAQKHPDADSLYVEEIDVGE 671
[Close]
BLAST of CB322082 vs. ExPASy Swiss-Prot
Match: SYM_ARATH (Probable methionyl-tRNA synthetase OS=Arabidopsis thaliana GN=At4g13780 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.966e-33
Identity = 81/156 (51.92%), Postives = 97/156 (62.18%), Query Frame = 3 
Query:    3 EPFMPSFSVEVNKQLNLQPEKHISLCDEKGDVDRARRPWEIIPAGHKIGSPNPLFKELKDDEVEFFRSKFAGSQADRIIRXXXXXXXXXXXXXXXXISDXXXXXXXXXXXXXXXXXXXXXEPEISIARLDIRVGKITKVQKHPDADALYVEEIDVG 470
            EPFMPSFS EV KQLNL P+   SL DE+G+V  A RPW+I+P  H+IG+P PLFKEL++DEV  +R KFAGSQ+DR  R                +SD                     + EI++ARLDIRVGKI K +KHP ADALYVEEIDVG
Sbjct:  516 EPFMPSFSCEVFKQLNLPPQ--FSLSDERGEVLLASRPWDILPPSHRIGTPQPLFKELENDEVARYREKFAGSQSDR--RARDEAANLADQLNKTKLSD-AKKQKASSKGGGKPKPQPAADREITMARLDIRVGKIVKAEKHPKADALYVEEIDVG 666
The following BLAST results are available for this feature:
BLAST of CB322082 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SYM_ORYSJ3.462e-3850.32Probable methionyl-tRNA synthetase OS=Oryza sativa... [more]
SYM_ARATH1.966e-3351.92Probable methionyl-tRNA synthetase OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionEST0188 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB003 similar to methionyl-tRNA synthetase (acc# Q9ZTS1), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322082 ID=CB322082; Name=CB322082; organism=Citrus sinensis; type=EST; length=474bp
TAGAACCTTTTATGCCTTCATTTTCTGTTGAGGTAAATAAGCAGCTTAAT
TTGCAACCTGAAAAGCATATATCACTTTGTGATGAAAAAGGAGATGTCGA
TAGGGCAAGAAGACCTTGGGAGATAATCCCTGCTGGTCATAAGATTGGTT
CACCTAATCCGTTATTCAAAGAACTGAAAGATGATGAAGTAGAATTCTTC
AGAAGTAAGTTTGCTGGAAGTCAAGCTGATAGGATTATTCGTGCGGAAGC
AGAAGCTGCAAAAACTGCTGAGCAACTGAAGAAAACCAAAATTTCAGATG
GTGGTGGAAAGAAACAAAAGTCAGCAAAATCTACAGCTGGAGCCAAATCA
AAAACCACCGCTGAACCAGAAATTTCGATTGCAAGACTTGATATCCGTGT
TGGAAAAATTACAAAAGTTCAAAAGCATCCTGATGCCGATGCACTGTATG
TAGAAGAAATTGATGTGGGTGAAG
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