CB322103

Overview
NameCB322103
Unique NameCB322103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11760 contig Csv1_Contig11760:910..1500. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_ORYSJ (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Oryza sativa subsp. japonica GN=CLA1 PE=2 SV=2)

HSP 1 Score: 336.65 bits (862), Expect = 5.394e-92
Identity = 157/195 (80.51%), Postives = 178/195 (91.28%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGS 585
            LA EG+KPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFD+T+M+CLPNMVVMAPSDEAEL HMVATAA IDDRPSCFR+PRGNGIG  LPPN KG PLE+GKGR+L+EG+RVA+LGYGS VQ C+ AA++++   + VTVADARFCKPLD  LIR+LA+ HE+L+TVEEGS+GGFGS
Sbjct:  456 LACEGLKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTYMACLPNMVVMAPSDEAELCHMVATAAAIDDRPSCFRYPRGNGIGVPLPPNYKGVPLEVGKGRVLLEGERVALLGYGSAVQYCLAAASLVERHGLKVTVADARFCKPLDQTLIRRLASSHEVLLTVEEGSIGGFGS 650          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_CAPAN (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Capsicum annuum GN=TKT2 PE=2 SV=1)

HSP 1 Score: 332.028 bits (850), Expect = 1.329e-90
Identity = 156/195 (80.00%), Postives = 176/195 (90.26%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGS 585
            LA EG+KPFCAIYSSF+QR YDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFD+TFM+CLPNMVVMAPSDEAEL H+VATAA IDDRPSCFR+PRGNGIG  LP  NKG PLE+GKGRIL+EG+RVA+LGYGS VQ C+ AA++L+S+ + VTVADARFCKPLD  LIR LA  HE+L+TVE+GS+GGFGS
Sbjct:  459 LACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMACLPNMVVMAPSDEAELFHIVATAAAIDDRPSCFRYPRGNGIGVELPAGNKGIPLEVGKGRILVEGERVALLGYGSAVQNCLAAASVLESRGLQVTVADARFCKPLDRALIRSLAKSHEVLVTVEKGSIGGFGS 653          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_ARATH (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=CLA1 PE=1 SV=2)

HSP 1 Score: 330.487 bits (846), Expect = 3.866e-90
Identity = 156/195 (80.00%), Postives = 174/195 (89.23%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGS 585
            LA EG+KPFCAIYSSF+QR YDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFD+TFM+CLPNM+VMAPSDEA+L +MVATA  IDDRPSCFR+PRGNGIG  LPP NKG P+EIGKGRIL EG+RVA+LGYGS VQ C+ AA ML+ + ++VTVADARFCKPLD  LIR LA  HE+LITVEEGS+GGFGS
Sbjct:  460 LACEGLKPFCAIYSSFMQRAYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTFMACLPNMIVMAPSDEADLFNMVATAVAIDDRPSCFRYPRGNGIGVALPPGNKGVPIEIGKGRILKEGERVALLGYGSAVQSCLGAAVMLEERGLNVTVADARFCKPLDRALIRSLAKSHEVLITVEEGSIGGFGS 654          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_RHOPS (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain BisB5) GN=dxs PE=3 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 1.169e-70
Identity = 128/195 (65.64%), Postives = 157/195 (80.51%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGS 585
            LA+EG KPFCAIYS+FLQR YDQVVHDV LQ LPVRFA+DRAGLVGADG TH G+FD  ++ CLPNMV+MA SDEAEL+HMVAT   I+DRPS  R+PRG G G  +P  + G PLEIGKGR++ +G++VA+L +G+ + +C  AA  L +  +S TVADARF KPLD DL+ +LANEHEILIT+EEGS+GGFG+
Sbjct:  379 LATEGYKPFCAIYSTFLQRAYDQVVHDVALQSLPVRFAIDRAGLVGADGATHAGSFDNAYLGCLPNMVIMAASDEAELVHMVATQVAINDRPSALRYPRGEGRGVEMP--DVGVPLEIGKGRVIRQGNKVALLSFGTRLAECEKAAEELAALGLSTTVADARFMKPLDVDLVLKLANEHEILITIEEGSIGGFGT 571          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_RHOP2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain HaA2) GN=dxs PE=3 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 1.527e-70
Identity = 127/195 (65.13%), Postives = 157/195 (80.51%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGS 585
            LA+EG KPFCAIYS+FLQRGYDQ+VHDV +Q LPVRFA+DRAGLVGADG TH G+FD  ++ CLPN V+MA SDEAEL+HMVAT   I+DRPS  R+PRG G G  +P  + G PLEIGKGR++ +G++VA+L +G+ + +C  AA  L +  +S TVADARF KPLD DL+ +LANEHEILIT+EEGS+GGFGS
Sbjct:  379 LATEGFKPFCAIYSTFLQRGYDQIVHDVAIQSLPVRFAIDRAGLVGADGATHAGSFDNAYLGCLPNFVIMAASDEAELVHMVATQVAINDRPSAVRYPRGEGRGVEMP--DVGVPLEIGKGRVIRQGNKVALLSFGTRLAECEKAAEELATLGLSTTVADARFMKPLDVDLVIKLANEHEILITIEEGSIGGFGS 571          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_BRAJA (1-deoxy-D-xylulose-5-phosphate synthase OS=Bradyrhizobium japonicum GN=dxs PE=3 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 1.995e-70
Identity = 126/195 (64.62%), Postives = 157/195 (80.51%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGS 585
            LASEG KPFCAIYS+FLQRGYDQ+VHDV +Q LPVRFA+DRAGLVGADG TH G+FD  ++ CLPNMV+MA +DEAEL+HMVAT   IDDRPS  R+PRG G G  +P    G PLEIGKGR++ +G ++A+L +G+ + +C  AA+ L +  +S T+ADARF KPLDT+L+ +LA +HEILIT+EEGSVGGFGS
Sbjct:  401 LASEGYKPFCAIYSTFLQRGYDQIVHDVAIQNLPVRFAIDRAGLVGADGATHAGSFDNAYLGCLPNMVIMAAADEAELVHMVATQVAIDDRPSSLRYPRGEGRGIEMP--EVGIPLEIGKGRMIRQGSKIALLSFGTRLAECEKAADELAAHGLSTTIADARFMKPLDTELVLKLARDHEILITIEEGSVGGFGS 593          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_BRUSU (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella suis GN=dxs PE=3 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 5.803e-70
Identity = 130/195 (66.67%), Postives = 156/195 (80.00%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGS 585
            LASEG KPFCAIYS+FLQRGYDQVVHDV +Q LPVRF +DRAGLVGADGPTH G+FD  F++ LP  VVMA SDEAEL HMV TAA  D+ P  FR+PRG+G+G  LP   +G+ LEIGKGRI+ EG +VA+L +G+ +Q+C+ AA  L +  +S TVADARF KPLD DLIR+LA EHE+L+ VEEG+VGGFGS
Sbjct:  380 LASEGYKPFCAIYSTFLQRGYDQVVHDVSIQNLPVRFPIDRAGLVGADGPTHAGSFDTGFLAALPGFVVMAASDEAELRHMVRTAAEYDEGPISFRYPRGDGVGVDLP--ERGSVLEIGKGRIVREGTKVALLSFGTRLQECLAAAEELGAAGLSTTVADARFAKPLDHDLIRRLAREHEVLVMVEEGAVGGFGS 572          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_BRUSI (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=dxs PE=3 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 5.803e-70
Identity = 130/195 (66.67%), Postives = 156/195 (80.00%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGS 585
            LASEG KPFCAIYS+FLQRGYDQVVHDV +Q LPVRF +DRAGLVGADGPTH G+FD  F++ LP  VVMA SDEAEL HMV TAA  D+ P  FR+PRG+G+G  LP   +G+ LEIGKGRI+ EG +VA+L +G+ +Q+C+ AA  L +  +S TVADARF KPLD DLIR+LA EHE+L+ VEEG+VGGFGS
Sbjct:  380 LASEGYKPFCAIYSTFLQRGYDQVVHDVSIQNLPVRFPIDRAGLVGADGPTHAGSFDTGFLAALPGFVVMAASDEAELRHMVRTAAEYDEGPISFRYPRGDGVGVDLP--ERGSVLEIGKGRIVREGTKVALLSFGTRLQECLAAAEELGATGLSTTVADARFAKPLDHDLIRRLAREHEVLVMVEEGAVGGFGS 572          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_BRUME (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella melitensis GN=dxs PE=3 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 5.803e-70
Identity = 130/195 (66.67%), Postives = 156/195 (80.00%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGS 585
            LASEG KPFCAIYS+FLQRGYDQVVHDV +Q LPVRF +DRAGLVGADGPTH G+FD  F++ LP  VVMA SDEAEL HMV TAA  D+ P  FR+PRG+G+G  LP   +G+ LEIGKGRI+ EG +VA+L +G+ +Q+C+ AA  L +  +S TVADARF KPLD DLIR+LA EHE+L+ VEEG+VGGFGS
Sbjct:  380 LASEGYKPFCAIYSTFLQRGYDQVVHDVSIQNLPVRFPIDRAGLVGADGPTHAGSFDTGFLAALPGFVVMAASDEAELRHMVRTAAEYDEGPISFRYPRGDGVGVDLP--ERGSVLEIGKGRIVREGTKVALLSFGTRLQECLAAAEELGAAGLSTTVADARFAKPLDHDLIRRLAREHEVLVMVEEGAVGGFGS 572          
BLAST of CB322103 vs. ExPASy Swiss-Prot
Match: DXS_BRUMB (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=dxs PE=3 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 5.803e-70
Identity = 130/195 (66.67%), Postives = 156/195 (80.00%), Query Frame = 1
Query:    1 LASEGVKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITFMSCLPNMVVMAPSDEAELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGS 585
            LASEG KPFCAIYS+FLQRGYDQVVHDV +Q LPVRF +DRAGLVGADGPTH G+FD  F++ LP  VVMA SDEAEL HMV TAA  D+ P  FR+PRG+G+G  LP   +G+ LEIGKGRI+ EG +VA+L +G+ +Q+C+ AA  L +  +S TVADARF KPLD DLIR+LA EHE+L+ VEEG+VGGFGS
Sbjct:  380 LASEGYKPFCAIYSTFLQRGYDQVVHDVSIQNLPVRFPIDRAGLVGADGPTHAGSFDTGFLAALPGFVVMAASDEAELRHMVRTAAEYDEGPISFRYPRGDGVGVDLP--ERGSVLEIGKGRIVREGTKVALLSFGTRLQECLAAAEELGAAGLSTTVADARFAKPLDHDLIRRLAREHEVLVMVEEGAVGGFGS 572          
The following BLAST results are available for this feature:
BLAST of CB322103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_ORYSJ5.394e-9280.51Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_CAPAN1.329e-9080.00Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_ARATH3.866e-9080.00Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_RHOPS1.169e-7065.641-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]
DXS_RHOP21.527e-7065.131-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]
DXS_BRAJA1.995e-7064.621-deoxy-D-xylulose-5-phosphate synthase OS=Bradyrh... [more]
DXS_BRUSU5.803e-7066.671-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_BRUSI5.803e-7066.671-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_BRUME5.803e-7066.671-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_BRUMB5.803e-7066.671-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]

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Properties
Property NameValue
Genbank descriptionEST0212 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB063 similar to 1-deoxyxylulose-5-phosphate synthase (acc# CAA09804), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322103 ID=CB322103; Name=CB322103; organism=Citrus sinensis; type=EST; length=591bp
TTAGCCTCAGAGGGAGTCAAGCCATTTTGTGCCATCTACTCATCATTTCT
GCAAAGAGGATATGATCAGGTTGTGCATGATGTAGACCTTCAAAAATTAC
CAGTCCGCTTTGCAATGGATCGGGCTGGTTTGGTTGGTGCGGATGGACCT
ACTCATTGTGGAGCATTTGACATCACATTCATGTCTTGCTTGCCCAACAT
GGTGGTCATGGCTCCATCTGATGAAGCTGAGCTAATGCACATGGTCGCTA
CAGCAGCAGTTATAGATGACAGGCCCAGCTGTTTCAGATTTCCAAGGGGC
AACGGAATTGGAGCAGTTCTCCCACCTAATAACAAAGGAACTCCACTTGA
GATTGGGAAGGGAAGAATCCTAATGGAAGGCGATAGAGTGGCAATTTTGG
GCTATGGTTCTGTAGTCCAACAATGTGTGCTAGCTGCGAACATGCTTAAG
AGCCAAGACATTTCCGTGACAGTGGCTGATGCAAGATTTTGCAAACCTTT
GGATACAGACCTCATTAGACAGTTGGCCAATGAGCATGAAATCCTAATTA
CTGTGGAAGAGGGTTCTGTGGGAGGCTTTGGCTCTCTGTAT
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