CB417303

Overview
NameCB417303
Unique NameCB417303
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length348
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig376 contig Csv1_Contig376:1..348. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_ARATH (Alanyl-tRNA synthetase, mitochondrial OS=Arabidopsis thaliana GN=ALATS PE=1 SV=3)

HSP 1 Score: 226.483 bits (576), Expect = 3.265e-59
Identity = 103/115 (89.57%), Postives = 107/115 (93.04%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASR 347
            KPIFLGTADPNT+LSKL+RA NTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFK EAIEW WELLTKVY LP DR+YATYFGGDEKAGL PDNEARDIWLK LP+ R
Sbjct:  104 KPIFLGTADPNTELSKLSRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVYGLPTDRIYATYFGGDEKAGLQPDNEARDIWLKVLPSGR 218          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYA_DICDI (Alanyl-tRNA synthetase OS=Dictyostelium discoideum GN=alaS PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 1.205e-45
Identity = 80/115 (69.57%), Postives = 95/115 (82.61%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASR 347
            KPIFLG  +P ++ +KL RA N+QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFG+YFK EAI W WELLT+VY+L  +RLY TYF GD + GL  D EA+++WL++LP  R
Sbjct:   47 KPIFLGQVNPKSEQAKLKRAVNSQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGNYFKKEAITWAWELLTEVYKLDKERLYVTYFRGDPEKGLEADLEAKNLWLQYLPEER 161          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYAC_YEAST (Alanyl-tRNA synthetase, cytoplasmic OS=Saccharomyces cerevisiae GN=ALA1 PE=1 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 4.578e-45
Identity = 79/107 (73.83%), Postives = 90/107 (84.11%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIW 323
            KPIFLGT DP +    L RA+N+QKCIRAGGKHNDL+DVGKD+YHHTFFEMLGNWSFGDYFK EAI ++W LLT+VY +P DRLY TYF GDEK GL PD EAR++W
Sbjct:   54 KPIFLGTVDPASDFYTLKRAYNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEVYGIPKDRLYVTYFEGDEKLGLEPDTEARELW 160          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYAC_BOMMO (Alanyl-tRNA synthetase, cytoplasmic OS=Bombyx mori PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 3.280e-43
Identity = 75/108 (69.44%), Postives = 86/108 (79.63%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWL 326
            KPIFLG+ DPN+ +++  R  NTQKCIRAGGKHNDLDDVGKD YHHTFFEM+GNWSFGDYFK E   W WELLT V++L  +RLY TYF GD  +GL PD E R+IWL
Sbjct:   50 KPIFLGSVDPNSDMAQYIRVVNTQKCIRAGGKHNDLDDVGKDVYHHTFFEMMGNWSFGDYFKKEICAWAWELLTDVFKLSRERLYVTYFEGDPSSGLEPDLECRNIWL 157          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYAC_SCHPO (Probable alanyl-tRNA synthetase, cytoplasmic OS=Schizosaccharomyces pombe GN=SPAC23C11.09 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 7.308e-43
Identity = 77/108 (71.30%), Postives = 88/108 (81.48%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWL 326
            KPIFLGT DP++  +KL RA ++QKCIRAGGKHNDL+DVGKD YHHT FEMLGNWSFGDYFK EAI   W+LLT VY L  D+LY TYFGG E++GL PD EAR +WL
Sbjct:   55 KPIFLGTVDPSSDFAKLKRACDSQKCIRAGGKHNDLEDVGKDNYHHTMFEMLGNWSFGDYFKKEAIAMAWDLLTNVYGLKKDQLYVTYFGGHEESGLEPDLEARQLWL 162          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYAC_RAT (Alanyl-tRNA synthetase, cytoplasmic OS=Rattus norvegicus GN=Aars PE=1 SV=3)

HSP 1 Score: 167.162 bits (422), Expect = 2.351e-41
Identity = 76/107 (71.03%), Postives = 86/107 (80.37%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIW 323
            KPIFL T DP+  ++KL+RA NTQKCIRAGGKHNDLDDVGKD YHHTFFEMLG+WSFGDYFK  A +   ELLT+ + +P +RLY TYFGGDE AGL PD E R IW
Sbjct:   50 KPIFLNTVDPSHPMAKLSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQEFGIPVERLYVTYFGGDEAAGLEPDLECRQIW 156          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYAC_MOUSE (Alanyl-tRNA synthetase, cytoplasmic OS=Mus musculus GN=Aars PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 3.070e-41
Identity = 76/107 (71.03%), Postives = 86/107 (80.37%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIW 323
            KPIFL T DP+  ++KL+RA NTQKCIRAGGKHNDLDDVGKD YHHTFFEMLG+WSFGDYFK  A +   ELLT+ + +P +RLY TYFGGDE AGL PD E R IW
Sbjct:   50 KPIFLNTIDPSHPMAKLSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQEFGIPVERLYVTYFGGDEAAGLEPDLECRQIW 156          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYAC_MESAU (Alanyl-tRNA synthetase, cytoplasmic OS=Mesocricetus auratus GN=AARS PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 3.070e-41
Identity = 76/107 (71.03%), Postives = 86/107 (80.37%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIW 323
            KPIFL T DP+  L+KL+RA NTQKCIRAGGKHNDLDDVGKD YHHTFFEMLG+WSFGDYFK  A +   ELLT+ + +P +RLY TYFGGDE AGL PD E + IW
Sbjct:   50 KPIFLNTIDPSHPLAKLSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQEFAIPVERLYVTYFGGDEAAGLEPDLECKQIW 156          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYAC_PONAB (Alanyl-tRNA synthetase, cytoplasmic OS=Pongo abelii GN=AARS PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 5.791e-40
Identity = 74/107 (69.16%), Postives = 85/107 (79.44%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIW 323
            KPIFL T DP+  ++K +RA NTQKCIRAGGKHNDLDDVGKD YHHTFFEMLG+WSFGDYFK  A +   ELLT+ + +P +RLY TYFGGDE AGL PD E + IW
Sbjct:   50 KPIFLNTIDPSHPMAKPSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQEFGIPIERLYVTYFGGDEAAGLEPDLECKQIW 156          
BLAST of CB417303 vs. ExPASy Swiss-Prot
Match: SYAC_HUMAN (Alanyl-tRNA synthetase, cytoplasmic OS=Homo sapiens GN=AARS PE=1 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 7.563e-40
Identity = 74/107 (69.16%), Postives = 85/107 (79.44%), Query Frame = 3
Query:    3 KPIFLGTADPNTQLSKLTRAFNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWTWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIW 323
            KPIFL T DP+  ++KL+RA NTQKCIRAGGKHNDLDDVGKD YHHTFFEMLG+WSFGDYFK  A +   ELLT+ + +P +RLY TYFGGDE AGL  D E + IW
Sbjct:   50 KPIFLNTIDPSHPMAKLSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQEFGIPIERLYVTYFGGDEAAGLEADLECKQIW 156          
The following BLAST results are available for this feature:
BLAST of CB417303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYA_ARATH3.265e-5989.57Alanyl-tRNA synthetase, mitochondrial OS=Arabidops... [more]
SYA_DICDI1.205e-4569.57Alanyl-tRNA synthetase OS=Dictyostelium discoideum... [more]
SYAC_YEAST4.578e-4573.83Alanyl-tRNA synthetase, cytoplasmic OS=Saccharomyc... [more]
SYAC_BOMMO3.280e-4369.44Alanyl-tRNA synthetase, cytoplasmic OS=Bombyx mori... [more]
SYAC_SCHPO7.308e-4371.30Probable alanyl-tRNA synthetase, cytoplasmic OS=Sc... [more]
SYAC_RAT2.351e-4171.03Alanyl-tRNA synthetase, cytoplasmic OS=Rattus norv... [more]
SYAC_MOUSE3.070e-4171.03Alanyl-tRNA synthetase, cytoplasmic OS=Mus musculu... [more]
SYAC_MESAU3.070e-4171.03Alanyl-tRNA synthetase, cytoplasmic OS=Mesocricetu... [more]
SYAC_PONAB5.791e-4069.16Alanyl-tRNA synthetase, cytoplasmic OS=Pongo abeli... [more]
SYAC_HUMAN7.563e-4069.16Alanyl-tRNA synthetase, cytoplasmic OS=Homo sapien... [more]

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Properties
Property NameValue
Genbank descriptionEST0379 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P024 similar to alanine tRNA ligase (acc# NP_175439), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417303 ID=CB417303; Name=CB417303; organism=Citrus sinensis; type=EST; length=348bp
ACAAGCCGATTTTTCTTGGAACCGCGGATCCGAATACTCAATTGAGTAAG
CTGACGCGCGCGTTTAACACTCAGAAGTGTATACGCGCCGGTGGTAAGCA
TAATGATTTAGACGATGTGGGGAAGGACACTTATCACCACACCTTCTTTG
AGATGCTTGGTAACTGGTCTTTTGGTGATTATTTTAAGAACGAAGCTATT
GAATGGACTTGGGAGTTGCTTACCAAGGTTTATAGGTTACCGGCTGATAG
ACTTTATGCTACTTATTTTGGCGGTGATGAGAAAGCTGGGCTTGCACCTG
ATAATGAAGCTAGAGACATTTGGCTCAAGTTTTTACCAGCTTCGCGTG
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